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4RN1

Crystal structure of S39D HDAC8 in complex with a largazole analogue.

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, BHistone deacetylase 8polymer38943260.02UniProt (Q9BY41)
Pfam (PF00850)
In PDB
Homo sapiens (human)HD8
2A, BZINC IONnon-polymer65.42Chemie (ZN)
3A, BPOTASSIUM IONnon-polymer39.14Chemie (K)
4A, B(5R,8S,11S)-5-methyl-8-(propan-2-yl)-11-[(1E)-4-sulfanylbut-1-en-1-yl]-3-thia-7,10,14,20,21-pentaazatricyclo[14.3.1.1~2,5~]henicosa-1(20),2(21),16,18-tetraene-6,9,13-trionenon-polymer489.72Chemie (L8G)
5AIMIDAZOLEnon-polymer69.11Chemie (IMD)
6AGLYCEROLnon-polymer92.11Chemie (GOL)
7waterwater18.0349Chemie (HOH)
Sequence modifications
A, B: 1 - 377 (UniProt: Q9BY41)
PDBExternal DatabaseDetails
Asp 39Ser 39engineered mutation
Ile 378-expression tag
Glu 379-expression tag
Gly 380-expression tag
Arg 381-expression tag
Gly 382-expression tag
Ser 383-expression tag
His 384-expression tag
His 385-expression tag
His 386-expression tag
His 387-expression tag
His 388-expression tag
His 389-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight86520.0
Non-Polymers*Number of molecules10
Total formula weight1427.7
All*Total formula weight87947.7
*Water molecules are not included.

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PDB entries from 2024-06-19

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