4RGQ
Crystal structure of the Methanocaldococcus jannaschii G1PDH with NADPH and DHAP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Glycerol-1-phosphate dehydrogenase | polymer | 368 | 41117.5 | 4 | UniProt (Q58122) Pfam (PF13685) | Methanocaldococcus jannaschii | G1P dehydrogenase, G1PDH, Enantiomeric glycerophosphate synthase, sn-glycerol-1-phosphate dehydrogenase |
| 2 | E, FA, Q, Y (A, D, B, C) | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | non-polymer | 745.4 | 4 | Chemie (NDP) | |||
| 3 | F, GA, R, Z (A, D, B, C) | POTASSIUM ION | non-polymer | 39.1 | 4 | Chemie (K) | |||
| 4 | AA, G, HA, S (C, A, D, B) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 5 | BA, H, IA (C, A, D) | 1,3-DIHYDROXYACETONEPHOSPHATE | non-polymer | 170.1 | 3 | Chemie (13P) | |||
| 6 | CA, DA, EA, I, J... (C, A, D, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 19 | Chemie (EDO) | |||
| 7 | T (B) | SN-GLYCEROL-1-PHOSPHATE | non-polymer | 172.1 | 1 | Chemie (1GP) | |||
| 8 | NA, OA, PA, QA (A, B, C, D) | water | water | 18.0 | 464 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 335 (UniProt: Q58122)
| PDB | External Database | Details |
|---|---|---|
| Met -32 | - | expression tag |
| His -31 | - | expression tag |
| His -30 | - | expression tag |
| His -29 | - | expression tag |
| His -28 | - | expression tag |
| His -27 | - | expression tag |
| His -26 | - | expression tag |
| Gly -25 | - | expression tag |
| Lys -24 | - | expression tag |
| Pro -23 | - | expression tag |
| Ile -22 | - | expression tag |
| Pro -21 | - | expression tag |
| Asn -20 | - | expression tag |
| Pro -19 | - | expression tag |
| Leu -18 | - | expression tag |
| Leu -17 | - | expression tag |
| Gly -16 | - | expression tag |
| Leu -15 | - | expression tag |
| Asp -14 | - | expression tag |
| Ser -13 | - | expression tag |
| Thr -12 | - | expression tag |
| Glu -11 | - | expression tag |
| Asn -10 | - | expression tag |
| Leu -9 | - | expression tag |
| Tyr -8 | - | expression tag |
| Phe -7 | - | expression tag |
| Gln -6 | - | expression tag |
| Gly -5 | - | expression tag |
| Ile -4 | - | expression tag |
| Asp -3 | - | expression tag |
| Pro -2 | - | expression tag |
| Phe -1 | - | expression tag |
| Thr 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 164469.9 | |
| Non-Polymers* | Number of molecules | 35 |
| Total formula weight | 5261.3 | |
| All* | Total formula weight | 169731.2 |
