4Q3B
PylD cocrystallized with L-Lysine-Ne-D-lysine and NAD+
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | PYLD, pyrrolysine synthase | polymer | 260 | 27963.8 | 4 | UniProt (Q46E80) Pfam (PF21455) | Methanosarcina barkeri | |
| 2 | E, HA, NA, R (A, C, D, B) | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | non-polymer | 665.4 | 4 | Chemie (NAI) | |||
| 3 | F, IA, OA, S (A, C, D, B) | SODIUM ION | non-polymer | 23.0 | 4 | Chemie (NA) | |||
| 4 | G, JA, PA, T (A, C, D, B) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 5 | H, KA, QA, U (A, C, D, B) | N~6~-[(2R)-2,3,4,5-tetrahydropyridin-2-ylcarbonyl]-L-lysine | non-polymer | 255.3 | 4 | Chemie (2YF) | |||
| 6 | I, LA, MA, V, W... (A, C, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 6 | Chemie (EDO) | |||
| 7 | AA, BA, CA, DA, J... (B, A, D) | GLYCEROL | non-polymer | 92.1 | 15 | Chemie (GOL) | |||
| 8 | EA, FA, GA (B) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 3 | Chemie (PEG) | |||
| 9 | SA, TA, UA, VA (A, B, C, D) | water | water | 18.0 | 348 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 259 (UniProt: Q46E80)
| PDB | External Database | Details |
|---|---|---|
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 111855.3 | |
| Non-Polymers* | Number of molecules | 40 |
| Total formula weight | 5944.4 | |
| All* | Total formula weight | 117799.7 |
