4Q3A
PylD cocrystallized with L-Lysine-Ne-3S-methyl-L-ornithine and NAD+
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | PYLD, pyrrolysine synthase | polymer | 260 | 27963.8 | 4 | UniProt (Q46E80) Pfam (PF21455) | Methanosarcina barkeri | |
| 2 | E, OA, T, WA (A, C, B, D) | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | non-polymer | 665.4 | 4 | Chemie (NAI) | |||
| 3 | F, PA, U, XA (A, C, B, D) | SODIUM ION | non-polymer | 23.0 | 4 | Chemie (NA) | |||
| 4 | G, QA, V, YA (A, C, B, D) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 5 | H, RA, W, ZA (A, C, B, D) | N~6~-{[(2S,3S)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonyl}-L-lysine | non-polymer | 255.3 | 4 | Chemie (2YC) | |||
| 6 | AA, BA, CA, I, J... (B, A, C) | GLYCEROL | non-polymer | 92.1 | 14 | Chemie (GOL) | |||
| 7 | FA, GA, P (B, A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 3 | Chemie (PEG) | |||
| 8 | HA, IA, JA, KA, LA... (B, A, C) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 13 | Chemie (EDO) | |||
| 9 | DA, EA (B) | SULFATE ION | non-polymer | 96.1 | 2 | Chemie (SO4) | |||
| 10 | AB, BB, CB, DB (A, B, C, D) | water | water | 18.0 | 326 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 259 (UniProt: Q46E80)
| PDB | External Database | Details |
|---|---|---|
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 111855.3 | |
| Non-Polymers* | Number of molecules | 48 |
| Total formula weight | 6478.9 | |
| All* | Total formula weight | 118334.2 |
