4Q3A
PylD cocrystallized with L-Lysine-Ne-3S-methyl-L-ornithine and NAD+
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | PYLD, pyrrolysine synthase | polymer | 260 | 27963.8 | 4 | UniProt (Q46E80) | Methanosarcina barkeri | |
| 2 | E, OA, T, WA (A, C, B, D) | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | non-polymer | 665.4 | 4 | Chemie (NAI) PubChem (16219774) PubChem (94865921) PubChem (94865923) PubChem (124432988) PubChem (124934831) PubChem (124934833) PubChem (129607000) PubChem (129628338) PubChem (146167236) PubChem (162951602) PubChem (174084875) PubChem (44119956) PubChem (44415182) PubChem (439153) PubChem (124934832) PubChem (126455899) PubChem (134693949) PubChem (12309339) PubChem (12309347) PubChem (928) PubChem (140875346) PubChem (162951601) PubChem (162951600) PubChem (164575491) PubChem (169545638) PubChem (170905224) PubChem (174316169) PubChem (11250888) PubChem (12309341) | |||
| 3 | F, PA, U, XA (A, C, B, D) | SODIUM ION | non-polymer | 23.0 | 4 | Chemie (NA) PubChem (923) | |||
| 4 | G, QA, V, YA (A, C, B, D) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) PubChem (888) | |||
| 5 | H, RA, W, ZA (A, C, B, D) | N~6~-{[(2S,3S)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonyl}-L-lysine | non-polymer | 255.3 | 4 | Chemie (2YC) | |||
| 6 | AA, BA, CA, I, J... (B, A, C) | GLYCEROL | non-polymer | 92.1 | 14 | Chemie (GOL) PubChem (753) | |||
| 7 | FA, GA, P (B, A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 3 | Chemie (PEG) PubChem (8117) | |||
| 8 | HA, IA, JA, KA, LA... (B, A, C) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 13 | Chemie (EDO) | |||
| 9 | DA, EA (B) | SULFATE ION | non-polymer | 96.1 | 2 | Chemie (SO4) | |||
| 10 | AB, BB, CB, DB (A, B, C, D) | water | water | 18.0 | 326 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 259 (UniProt: Q46E80)
| PDB | External Database | Details |
|---|---|---|
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 111855.3 | |
| Non-Polymers* | Number of molecules | 48 |
| Total formula weight | 6478.9 | |
| All* | Total formula weight | 118334.2 |
