4PTN
Crystal Structure of YagE, a KDG aldolase protein in complex with Magnesium cation coordinated L-glyceraldehyde
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | Probable 2-keto-3-deoxy-galactonate aldolase YagE | polymer | 343 | 37013.2 | 4 | UniProt (P75682) Pfam (PF00701) In PDB | Escherichia coli | Probable KDGal aldolase YagE |
2 | A, B, C, D | 1,2-ETHANEDIOL | non-polymer | 62.1 | 11 | Chemie (EDO) | |||
3 | A, B, C, D | L-glyceraldehyde | non-polymer | 90.1 | 4 | Chemie (GXV) | |||
4 | A, B, C, D | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
5 | B | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
6 | B, D | PYRUVIC ACID | non-polymer | 88.1 | 2 | Chemie (PYR) | |||
7 | water | water | 18.0 | 525 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 8 - 309 (UniProt: P75682)
PDB | External Database | Details |
---|---|---|
Met -17 | - | expression tag |
Gly -16 | - | expression tag |
Ser -15 | - | expression tag |
Ser -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
His -11 | - | expression tag |
His -10 | - | expression tag |
His -9 | - | expression tag |
His -8 | - | expression tag |
Ser -7 | - | expression tag |
Ala -6 | - | expression tag |
Gly -5 | - | expression tag |
Glu -4 | - | expression tag |
Asn -3 | - | expression tag |
Leu -2 | - | expression tag |
Tyr -1 | - | expression tag |
Phe 0 | - | expression tag |
Gln 1 | - | expression tag |
Gly 2 | - | expression tag |
Gln 3 | - | expression tag |
Gln 4 | - | expression tag |
Gly 5 | - | expression tag |
Asp 6 | - | expression tag |
Leu 7 | - | expression tag |
Cys 310 | - | expression tag |
Gly 311 | - | expression tag |
Arg 312 | - | expression tag |
Thr 313 | - | expression tag |
Arg 314 | - | expression tag |
Ala 315 | - | expression tag |
Pro 316 | - | expression tag |
Pro 317 | - | expression tag |
Pro 318 | - | expression tag |
Pro 319 | - | expression tag |
Pro 320 | - | expression tag |
Leu 321 | - | expression tag |
Arg 322 | - | expression tag |
Ser 323 | - | expression tag |
Gly 324 | - | expression tag |
Cys 325 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 148052.7 | |
Non-Polymers* | Number of molecules | 22 |
Total formula weight | 1408.5 | |
All* | Total formula weight | 149461.2 |