4PF6
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSEOBACTER DENITRIFICANS (RD1_0742, TARGET EFI-510239) WITH BOUND 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID (KDO)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | C4-dicarboxylate-binding protein | polymer | 330 | 36671.3 | 1 | UniProt (Q16C67) Pfam (PF03480) | Roseobacter denitrificans (Erythrobacter sp. (strain OCh 114)) | TRAP PERIPLASMIC SOLUTE BINDING PROTEIN |
| 2 | B (A) | 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid | non-polymer | 238.2 | 1 | Chemie (KDO) PubChem (177608129) PubChem (46936712) PubChem (51351682) PubChem (54120672) PubChem (59879037) PubChem (445569) PubChem (54120673) PubChem (86308775) PubChem (13990111) PubChem (91130708) PubChem (4636210) PubChem (92131880) PubChem (93477607) PubChem (101259516) PubChem (102104650) PubChem (102502503) PubChem (117731569) PubChem (10082895) PubChem (10243263) PubChem (12775611) PubChem (10354174) PubChem (123948409) PubChem (10857507) PubChem (11736546) PubChem (11776331) PubChem (124526013) PubChem (12775606) PubChem (12775607) PubChem (12775609) PubChem (126544103) PubChem (135037314) PubChem (135040540) PubChem (135041481) PubChem (135070235) PubChem (135081089) PubChem (140373577) PubChem (146415574) PubChem (155539835) PubChem (163811278) PubChem (164803663) PubChem (174067243) | |||
| 3 | C (A) | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 1 | Chemie (PGE) | |||
| 4 | D, E (A) | SULFATE ION | non-polymer | 96.1 | 2 | Chemie (SO4) | |||
| 5 | F (A) | water | water | 18.0 | 434 | Chemie (HOH) |
Sequence modifications
A: 25 - 331 (UniProt: Q16C67)
| PDB | External Database | Details |
|---|---|---|
| Mse 2 | - | initiating methionine |
| His 3 | - | expression tag |
| His 4 | - | expression tag |
| His 5 | - | expression tag |
| His 6 | - | expression tag |
| His 7 | - | expression tag |
| His 8 | - | expression tag |
| Ser 9 | - | expression tag |
| Ser 10 | - | expression tag |
| Gly 11 | - | expression tag |
| Val 12 | - | expression tag |
| Asp 13 | - | expression tag |
| Leu 14 | - | expression tag |
| Gly 15 | - | expression tag |
| Thr 16 | - | expression tag |
| Glu 17 | - | expression tag |
| Asn 18 | - | expression tag |
| Leu 19 | - | expression tag |
| Tyr 20 | - | expression tag |
| Phe 21 | - | expression tag |
| Gln 22 | - | expression tag |
| Ser 23 | - | expression tag |
| Mse 24 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 36671.3 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 580.5 | |
| All* | Total formula weight | 37251.8 |
