4PD8
Structure of vcCNT-7C8C bound to pyrrolo-cytidine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | NupC family protein | polymer | 424 | 44151.8 | 1 | UniProt (Q9KPL5) Pfam (PF01773) Pfam (PF07670) Pfam (PF07662) | Vibrio cholerae serotype O1 | |
| 2 | B (A) | 6-methyl-3-(beta-D-ribofuranosyl)-3,7-dihydro-2H-pyrrolo[2,3-d]pyrimidin-2-one | non-polymer | 281.3 | 1 | Chemie (P0C) PubChem (21868282) PubChem (69630326) PubChem (92022022) PubChem (118004862) PubChem (172438467) | |||
| 3 | C (A) | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) PubChem (923) | |||
| 4 | D (A) | DECYL-BETA-D-MALTOPYRANOSIDE | non-polymer | 482.6 | 1 | Chemie (DMU) PubChem (24776995) PubChem (16396531) PubChem (24802064) PubChem (45253991) PubChem (45254001) PubChem (45253971) PubChem (49866911) PubChem (56845266) PubChem (3637526) PubChem (58112552) PubChem (59518661) PubChem (5288091) PubChem (70796430) PubChem (70839938) PubChem (71307274) PubChem (95370474) PubChem (95370475) PubChem (95370476) PubChem (98046559) PubChem (98046561) PubChem (95370473) PubChem (100941450) PubChem (100950626) PubChem (98046563) PubChem (5288728) PubChem (101207920) PubChem (102219024) PubChem (126735852) PubChem (118704896) PubChem (123134571) PubChem (124867949) PubChem (124867950) PubChem (124867951) PubChem (124867952) PubChem (126731012) PubChem (126731036) PubChem (126735974) PubChem (168490163) | |||
| 5 | E (A) | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
A: 1 - 418 (UniProt: Q9KPL5)
| PDB | External Database | Details |
|---|---|---|
| Gly -5 | - | expression tag |
| Pro -4 | - | expression tag |
| Ala -3 | - | expression tag |
| Val -2 | - | expression tag |
| Pro -1 | - | expression tag |
| Arg 0 | - | expression tag |
| Cys 7 | Leu 7 | engineered mutation |
| Cys 8 | Ile 8 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 44151.8 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 786.8 | |
| All* | Total formula weight | 44938.7 |
