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4P4F

X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with a phosphoramidate inhibitor NC-2-40

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Glutamate carboxypeptidase 2polymer70779614.81UniProt (Q04609)
Pfam (PF02225)
Pfam (PF04389)
Pfam (PF04253)
Homo sapiens (Human)Cell growth-inhibiting gene 27 protein,Folate hydrolase 1,Folylpoly-gamma-glutamate carboxypeptidase,FGCP,Glutamate carboxypeptidase II,GCPII,Membrane glutamate carboxypeptidase,mGCP,N-acetylated-alpha-linked acidic dipeptidase I,NAALADase I,Prostate-specific membrane antigen,PSMA,Pteroylpoly-gamma-glutamate carboxypeptidase
2B, C, D
(B, C, D)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.43In PDB
GlyTouCan (G42666HT)
3E
(E)
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched586.51In PDB
GlyTouCan (G15407YE)
4F
(F)
alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched748.71In PDB
GlyTouCan (G81315DD)
5G, H
(A)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.22Chemie (NAG)
6I, J
(A)
ZINC IONnon-polymer65.42Chemie (ZN)
7K
(A)
CALCIUM IONnon-polymer40.11Chemie (CA)
8L
(A)
CHLORIDE IONnon-polymer35.51Chemie (CL)
9M
(A)
N-[(S)-(biphenyl-4-ylmethoxy)(hydroxy)phosphoryl]-L-glutamic acidnon-polymer393.31Chemie (2GB)
10N
(A)
waterwater18.0582Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight79614.8
BranchedNumber of molecules5
Total formula weight2608.4
Non-Polymers*Number of molecules7
Total formula weight1042.1
All*Total formula weight83265.3
*Water molecules are not included.

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PDB entries from 2026-02-04

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