4OPO
Crystal structure of P domain from norovirus strain Saga4 in complex with HBGA type Leb (tetraglycan)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | VP1 | polymer | 309 | 34041.1 | 2 | UniProt (B5BTT5) Pfam (PF08435) | Norovirus Hu/GII-4/Kumamoto5/2006/JP | |
| 2 | C, D (C, D) | alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-[alpha-L-fucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 675.6 | 2 | In PDB BIRD (PRD_900123) GlyTouCan (G00048MO) | Lewis B antigen, beta anomer | ||
| 3 | E, H (A, B) | ACETATE ION | non-polymer | 59.0 | 2 | Chemie (ACT) | |||
| 4 | F, G, I, J, K (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
| 5 | L, M (A, B) | water | water | 18.0 | 812 | Chemie (HOH) |
Sequence modifications
A, B: 225 - 530 (UniProt: B5BTT5)
| PDB | External Database | Details |
|---|---|---|
| Thr 222 | - | expression tag |
| Gly 223 | - | expression tag |
| Ser 224 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 68082.1 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1351.3 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 428.4 | |
| All* | Total formula weight | 69861.8 |
