4OE7
Crystal structure of YagE, a KDG aldolase protein, in complex with aldol condensed product of pyruvate and glyoxal
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Probable 2-keto-3-deoxy-galactonate aldolase YagE | polymer | 343 | 37013.2 | 4 | UniProt (P75682) Pfam (PF00701) | Escherichia coli | Probable KDGal aldolase YagE |
| 2 | CA, DA, E, EA, FA... (C, A, D, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 27 | Chemie (EDO) | |||
| 3 | AA, F, P, Q, QA (C, A, B, D) | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
| 4 | BA, H, RA, S (C, A, D, B) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 5 | M (A) | ethanedial | non-polymer | 58.0 | 1 | Chemie (GXT) | |||
| 6 | KA, N (C, A) | PYRUVIC ACID | non-polymer | 88.1 | 2 | Chemie (PYR) | |||
| 7 | TA, X (D, B) | (4S)-4-hydroxy-2,5-dioxopentanoic acid | non-polymer | 146.1 | 2 | Chemie (GXP) | |||
| 8 | UA, Y (D, B) | (4R)-4-hydroxy-2,5-dioxopentanoic acid | non-polymer | 146.1 | 2 | Chemie (GXS) | |||
| 9 | VA, WA, XA, YA (A, B, C, D) | water | water | 18.0 | 205 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 8 - 309 (UniProt: P75682)
| PDB | External Database | Details |
|---|---|---|
| Met -17 | - | expression tag |
| Gly -16 | - | expression tag |
| Ser -15 | - | expression tag |
| Ser -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| Ser -7 | - | expression tag |
| Ala -6 | - | expression tag |
| Gly -5 | - | expression tag |
| Glu -4 | - | expression tag |
| Asn -3 | - | expression tag |
| Leu -2 | - | expression tag |
| Tyr -1 | - | expression tag |
| Phe 0 | - | expression tag |
| Gln 1 | - | expression tag |
| Gly 2 | - | expression tag |
| Gln 3 | - | expression tag |
| Gln 4 | - | expression tag |
| Gly 5 | - | expression tag |
| Asp 6 | - | expression tag |
| Leu 7 | - | expression tag |
| Cys 310 | - | expression tag |
| Gly 311 | - | expression tag |
| Arg 312 | - | expression tag |
| Thr 313 | - | expression tag |
| Arg 314 | - | expression tag |
| Ala 315 | - | expression tag |
| Pro 316 | - | expression tag |
| Pro 317 | - | expression tag |
| Pro 318 | - | expression tag |
| Pro 319 | - | expression tag |
| Pro 320 | - | expression tag |
| Leu 321 | - | expression tag |
| Arg 322 | - | expression tag |
| Ser 323 | - | expression tag |
| Gly 324 | - | expression tag |
| Cys 325 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 148052.7 | |
| Non-Polymers* | Number of molecules | 43 |
| Total formula weight | 3052.1 | |
| All* | Total formula weight | 151104.8 |
