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4OC5

X-ray structure of of human glutamate carboxypeptidase II (GCPII) in a complex with CHIBzL, a urea-based inhibitor N~2~-{[(S)-carboxy(4-hydroxyphenyl)methyl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysine

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AGlutamate carboxypeptidase 2polymer70979859.01UniProt (Q04609)
Pfam (PF02225)
Pfam (PF04389)
Pfam (PF04253)
In PDB
Homo sapiens (human)Cell growth-inhibiting gene 27 protein, Folate hydrolase 1, Folylpoly-gamma-glutamate carboxypeptidase, FGCP, Glutamate carboxypeptidase II, GCPII, Membrane glutamate carboxypeptidase, mGCP, N-acetylated-alpha-linked acidic dipeptidase I, NAALADase I, Prostate-specific membrane antigen, PSM, PSMA, Pteroylpoly-gamma-glutamate carboxypeptidase
2B, C, D2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.43In PDB
GlyTouCan (G42666HT)
3Ealpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched748.71In PDB
GlyTouCan (G81315DD)
4A2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.23Chemie (NAG)
5AZINC IONnon-polymer65.42Chemie (ZN)
6ACALCIUM IONnon-polymer40.11Chemie (CA)
7ACHLORIDE IONnon-polymer35.51Chemie (CL)
8AN~2~-{[(S)-carboxy(4-hydroxyphenyl)methyl]carbamoyl}-N~6~-(4-iodobenzoyl)-L-lysinenon-polymer569.31Chemie (2QM)
9waterwater18.0499Chemie (HOH)
Sequence modifications
A: 44 - 750 (UniProt: Q04609)
PDBExternal DatabaseDetails
Arg 42-expression tag
Ser 43-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight79859.0
BranchedNumber of molecules4
Total formula weight2021.9
Non-Polymers*Number of molecules8
Total formula weight1439.3
All*Total formula weight83320.2
*Water molecules are not included.

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PDB entries from 2024-05-15

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