4NNJ
Crystal structure of Uba1 in complex with ubiquitin-AMP and thioesterified ubiquitin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, C) | Ubiquitin-activating enzyme E1 1 | polymer | 1040 | 116304.9 | 2 | UniProt (P22515) Pfam (PF00899) Pfam (PF16190) Pfam (PF16191) Pfam (PF10585) Pfam (PF09358) | Saccharomyces cerevisiae (Baker's yeast) | |
| 2 | B, D, E (B, D, E) | Uba1 | polymer | 79 | 8798.0 | 3 | UniProt (P0CG63) Pfam (PF00240) | Saccharomyces cerevisiae (Baker's yeast) | Ubiquitin |
| 3 | F, MA, X, Z (A, C) | SULFATE ION | non-polymer | 96.1 | 4 | Chemie (SO4) | |||
| 4 | AA, BA, CA, DA, EA... (C, A) | GLYCEROL | non-polymer | 92.1 | 29 | Chemie (GOL) PubChem (753) | |||
| 5 | NA, Y (D, B) | ADENOSINE MONOPHOSPHATE | non-polymer | 347.2 | 2 | Chemie (AMP) PubChem (16397049) PubChem (16760266) PubChem (40459109) PubChem (46875232) PubChem (40467049) PubChem (40469468) PubChem (44348067) PubChem (45358029) PubChem (177678969) PubChem (6083) PubChem (46874558) PubChem (1549371) PubChem (92144436) PubChem (57358045) PubChem (12358354) PubChem (57879893) PubChem (57879902) PubChem (224) PubChem (122197642) PubChem (34768) PubChem (83862) PubChem (446048) PubChem (515384) PubChem (638042) PubChem (5316444) PubChem (5742864) PubChem (12163610) PubChem (12358355) PubChem (162290139) PubChem (162946266) PubChem (171699505) | |||
| 6 | OA, PA, QA, RA, SA (A, B, C, D, E) | water | water | 18.0 | 1020 | Chemie (HOH) |
Sequence modifications
A, C: 9 - 1024 (UniProt: P22515)
B, D, E: 1 - 76 (UniProt: P0CG63)
| PDB | External Database | Details |
|---|---|---|
| Met -15 | - | expression tag |
| Gly -14 | - | expression tag |
| Ser -13 | - | expression tag |
| Ser -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| His -6 | - | expression tag |
| Ser -5 | - | expression tag |
| Ser -4 | - | expression tag |
| Gly -3 | - | expression tag |
| Glu -2 | - | expression tag |
| Asn -1 | - | expression tag |
| Leu 0 | - | expression tag |
| Tyr 1 | - | expression tag |
| Phe 2 | - | expression tag |
| Gln 3 | - | expression tag |
| Gly 4 | - | expression tag |
| Ser 5 | - | expression tag |
| His 6 | - | expression tag |
| Met 7 | - | expression tag |
| Ala 8 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Ser -2 | - | expression tag |
| Ala -1 | - | expression tag |
| Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 259003.8 | |
| Non-Polymers* | Number of molecules | 35 |
| Total formula weight | 3749.4 | |
| All* | Total formula weight | 262753.3 |
