4NHY
Crystal structure of human OGFOD1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, in complex with pyridine-2,4-dicarboxylic acid (2,4-PDCA)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1 | polymer | 562 | 65499.4 | 4 | UniProt (Q8N543) Pfam (PF13661) Pfam (PF10637) In PDB | Homo sapiens (human) | Termination and polyadenylation 1 homolog |
2 | A, B, C, D | MANGANESE (II) ION | non-polymer | 54.9 | 4 | Chemie (MN) | |||
3 | A, B, D | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
4 | A, B, C, D | PYRIDINE-2,4-DICARBOXYLIC ACID | non-polymer | 167.1 | 4 | Chemie (PD2) | |||
5 | water | water | 18.0 | 83 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 542 (UniProt: Q8N543)
PDB | External Database | Details |
---|---|---|
Met -19 | - | initiating methionine |
Gly -18 | - | expression tag |
Ser -17 | - | expression tag |
Ser -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
His -11 | - | expression tag |
His -10 | - | expression tag |
Ser -9 | - | expression tag |
Ser -8 | - | expression tag |
Gly -7 | - | expression tag |
Leu -6 | - | expression tag |
Val -5 | - | expression tag |
Pro -4 | - | expression tag |
Arg -3 | - | expression tag |
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 261997.7 | |
Non-Polymers* | Number of molecules | 11 |
Total formula weight | 1164.5 | |
All* | Total formula weight | 263162.2 |