4MJ0
BK Polyomavirus VP1 pentamer in complex with GD3 oligosaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | VP1 capsid protein | polymer | 275 | 30261.0 | 5 | UniProt (Q85235) Pfam (PF00718) UniProt (by SIFTS) (P03088) | BK polyomavirus (BKPyV) | |
| 2 | F (F) | N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 924.8 | 1 | In PDB GlyTouCan (G98544DH) | |||
| 3 | G, I (G, I) | N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid | branched | 600.5 | 2 | In PDB GlyTouCan (G87492XO) | |||
| 4 | H (H) | N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose | branched | 762.7 | 1 | In PDB GlyTouCan (G43195TR) | |||
| 5 | J, L, M, O, Q... (A, B, C, D, E) | GLYCEROL | non-polymer | 92.1 | 7 | Chemie (GOL) | |||
| 6 | K, N, P, R, U (A, B, C, D, E) | CHLORIDE ION | non-polymer | 35.5 | 5 | Chemie (CL) | |||
| 7 | V, W, X, Y, Z (A, B, C, D, E) | water | water | 18.0 | 1280 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 30 - 300 (UniProt: Q85235)
| PDB | External Database | Details |
|---|---|---|
| Gly 26 | - | expression tag |
| Ser 27 | - | expression tag |
| His 28 | - | expression tag |
| Met 29 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 151305.2 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 2888.5 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 821.9 | |
| All* | Total formula weight | 155015.6 |
