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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4LSK

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, EB
(QA, XA)		16S rRNApolymer1522493958.32GenBank (AP008226.1)Thermus thermophilus
2B, FB
(QB, XB)		30S ribosomal protein S2polymer25629317.72UniProt (P80371)
Pfam (PF00318)		Thermus thermophilus
3C, GB
(QC, XC)		30S ribosomal protein S3polymer23926751.12UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)		Thermus thermophilus
4D, HB
(QD, XD)		30S ribosomal protein S4polymer20924373.42UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)		Thermus thermophilus
5E, IB
(QE, XE)		30S ribosomal protein S5polymer16217583.42UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)		Thermus thermophilus
6F, JB
(QF, XF)		30S ribosomal protein S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)		Thermus thermophilus
7G, KB
(QG, XG)		30S ribosomal protein S7polymer15618051.02UniProt (P17291)
Pfam (PF00177)		Thermus thermophilus
8H, LB
(QH, XH)		30S ribosomal protein S8polymer13815868.62UniProt (Q5SHQ2)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)		Thermus thermophilus
9I, MB
(QI, XI)		30S ribosomal protein S9polymer12814410.62UniProt (P80374)
Pfam (PF00380)		Thermus thermophilus
10J, NB
(QJ, XJ)		30S ribosomal protein S10polymer10511955.02UniProt (Q5SHN7)
Pfam (PF00338)		Thermus thermophilus
11K, OB
(QK, XK)		30S ribosomal protein S11polymer12913737.92UniProt (P80376)
Pfam (PF00411)		Thermus thermophilus
12L, PB
(QL, XL)		30S ribosomal protein S12polymer13214637.42UniProt (Q5SHN3)
Pfam (PF00164)		Thermus thermophilus
13M, QB
(QM, XM)		30S ribosomal protein S13polymer12614338.92UniProt (P80377)
Pfam (PF00416)		Thermus thermophilus
14N, RB
(QN, XN)		30S ribosomal protein S14polymer617158.72UniProt (Q5SHQ1)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)		Thermus thermophilus
15O, SB
(QO, XO)		30S ribosomal protein S15polymer8910578.42UniProt (Q5SJ76)
Pfam (PF00312)		Thermus thermophilus
16P, TB
(QP, XP)		30S ribosomal protein S16polymer8810410.02UniProt (Q5SJH3)
Pfam (PF00886)		Thermus thermophilus
17Q, UB
(QQ, XQ)		30S ribosomal protein S17polymer10512325.72UniProt (Q5SHP7)
Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)		Thermus thermophilus
18R, VB
(QR, XR)		30S ribosomal protein S18polymer8810258.32UniProt (Q5SLQ0)
Pfam (PF01084)		Thermus thermophilus
19S, WB
(QS, XS)		30S ribosomal protein S19polymer9310605.52UniProt (Q5SHP2)
Pfam (PF00203)		Thermus thermophilus
20T, XB
(QT, XT)		30S ribosomal protein S20polymer10611736.12UniProt (P80380)
Pfam (PF01649)		Thermus thermophilus
21U, YB
(QU, XU)		30S ribosomal protein S21polymer273350.02UniProt (Q5SIH3)
Pfam (PF17070)		Thermus thermophilus
22V, ZB
(QV, XV)		P-site tRNA fMetpolymer7724802.82GenBank (AP012306.1)Escherichia coli
23AC, W
(QY, XY)		messenger RNApolymer175488.32Synthetic
24BC, X
(QX, XX)		A-site ASL SufA6polymer258211.02Synthetic
25CC, Y
(RA, YA)		23S rRNApolymer2916948240.62GenBank (AP008226.1)Thermus thermophilus
26DC, Z
(RB, YB)		5S rRNApolymer12239494.52GenBank (AP008226.1)Thermus thermophilus
27AA, EC
(RD, YD)		50S ribosomal protein L2polymer27630532.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)		Thermus thermophilus
28BA, FC
(RE, YE)		50S ribosomal protein L3polymer20622450.22UniProt (Q5SHN8)
Pfam (PF00297)		Thermus thermophilus
29CA, GC
(RF, YF)		50S ribosomal protein L4polymer21023271.92UniProt (Q5SHN9)
Pfam (PF00573)		Thermus thermophilus
30DA, HC
(RG, YG)		50S ribosomal protein L5polymer18221061.62UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)		Thermus thermophilus
31EA, IC
(RH, YH)		50S ribosomal protein L6polymer18019568.92UniProt (Q5SHQ3)
Pfam (PF00347)
UniProt (by SIFTS) (P0DOY8)		Thermus thermophilus
32FA, JC
(RI, YI)		50S ribosomal protein L9polymer14816422.22UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)		Thermus thermophilus
33GA, KC
(RN, YN)		50S ribosomal protein L13polymer14015927.92UniProt (P60488)
Pfam (PF00572)		Thermus thermophilus
34HA, LC
(RO, YO)		50S ribosomal protein L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)		Thermus thermophilus
35IA, MC
(RP, YP)		50S ribosomal protein L15polymer15016319.12UniProt (Q5SHQ7)
Pfam (PF00828)		Thermus thermophilus
36JA, NC
(RQ, YQ)		50S ribosomal protein L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)		Thermus thermophilus
37KA, OC
(RR, YR)		50S ribosomal protein L17polymer11813750.12UniProt (Q9Z9H5)
Pfam (PF01196)		Thermus thermophilus
38LA, PC
(RS, YS)		50S ribosomal protein L18polymer11212639.82UniProt (Q5SHQ4)
Pfam (PF00861)		Thermus thermophilus
39MA, QC
(RT, YT)		50S ribosomal protein L19polymer14617188.82UniProt (P60490)
Pfam (PF01245)		Thermus thermophilus
40NA, RC
(RU, YU)		50S ribosomal protein L20polymer11813779.32UniProt (P60491)
Pfam (PF00453)		Thermus thermophilus
41OA, SC
(RV, YV)		50S ribosomal protein L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)		Thermus thermophilus
42PA, TC
(RW, YW)		50S ribosomal protein L22polymer11312808.12UniProt (Q5SHP3)
Pfam (PF00237)		Thermus thermophilus
43QA, UC
(RX, YX)		50S ribosomal protein L23polymer9610759.82UniProt (Q5SHP0)
Pfam (PF00276)		Thermus thermophilus
44RA, VC
(RY, YY)		50S ribosomal protein L24polymer11012085.62UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)		Thermus thermophilus
45SA, WC
(RZ, YZ)		50S ribosomal protein L25polymer20623238.62UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)		Thermus thermophilus
46TA, XC
(R0, Y0)		50S ribosomal protein L27polymer859529.12UniProt (P60493)
Pfam (PF01016)		Thermus thermophilus
47UA, YC
(R1, Y1)		50S ribosomal protein L28polymer9811004.22UniProt (P60494)
Pfam (PF00830)		Thermus thermophilus
48VA, ZC
(R2, Y2)		50S ribosomal protein L29polymer728670.32UniProt (Q5SHP6)
Pfam (PF00831)		Thermus thermophilus
49AD, WA
(R3, Y3)		50S ribosomal protein L30polymer606799.12UniProt (Q5SHQ6)
Pfam (PF00327)		Thermus thermophilus
50BD, XA
(R4, Y4)		50S ribosomal protein L31polymer718300.52UniProt (Q5SJE1)
Pfam (PF01197)		Thermus thermophilus
51CD, YA
(R5, Y5)		50S ribosomal protein L32polymer606722.12UniProt (P80339)
Pfam (PF01783)		Thermus thermophilus
52DD, ZA
(R6, Y6)		50S ribosomal protein L33polymer546632.92UniProt (P35871)
Pfam (PF00471)		Thermus thermophilus
53AB, ED
(R7, Y7)		50S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)		Thermus thermophilus
54BB, FD
(R8, Y8)		50S ribosomal protein L35polymer657506.22UniProt (Q5SKU1)
Pfam (PF01632)		Thermus thermophilus
55CB, GD
(R9, Y9)		50S ribosomal protein L36polymer374435.42UniProt (P80256)
Pfam (PF00444)
UniProt (by SIFTS) (Q5SHR2)		Thermus thermophilus
56DB, HD
(Z6, Z8)		tRNA acceptor end mimicpolymer31098.92Synthetic
57AAA, ABA, ACA, ADA, AE...
(YA, QA, RA, XA, QV...)		MAGNESIUM IONnon-polymer24.3672Chemie (MG)
PubChem (888)
58RS, VF
(XA, QA)		PAROMOMYCINnon-polymer615.62Chemie (PAR)
PubChem (16757804)
PubChem (16760604)
PubChem (17757254)
PubChem (20849281)
PubChem (71191297)
PubChem (165580)
PubChem (23789070)
PubChem (24096964)
PubChem (24867526)
PubChem (24867858)
PubChem (25104843)
PubChem (71188564)
PubChem (44120093)
PubChem (44251565)
PubChem (44186758)
PubChem (44663324)
PubChem (45358711)
PubChem (53486370)
PubChem (50989619)
PubChem (58160567)
PubChem (59361026)
PubChem (59800245)
PubChem (70793652)
PubChem (70793824)
PubChem (70795918)
PubChem (71068776)
PubChem (71072581)
PubChem (71072592)
PubChem (66932615)
PubChem (68032118)
PubChem (4689)
PubChem (14951)
PubChem (24176)
PubChem (6602492)
PubChem (6713982)
PubChem (70878598)
PubChem (71751432)
PubChem (91151908)
PubChem (73707499)
PubChem (9961808)
PubChem (3040200)
PubChem (94469269)
PubChem (94469270)
PubChem (94469271)
PubChem (91867972)
PubChem (98048758)
PubChem (98048760)
PubChem (91972181)
PubChem (94469268)
PubChem (98048759)
PubChem (98048761)
PubChem (5702262)
PubChem (121292209)
PubChem (6603975)
PubChem (101739930)
PubChem (6604293)
PubChem (122537356)
PubChem (6710686)
PubChem (124226135)
PubChem (124464537)
PubChem (9809147)
PubChem (125040357)
PubChem (125040359)
PubChem (125121197)
PubChem (129009945)
PubChem (131841783)
PubChem (132275078)
PubChem (118213779)
PubChem (118705495)
PubChem (122691713)
PubChem (124226132)
PubChem (124226133)
PubChem (124226134)
PubChem (124464538)
PubChem (12313981)
PubChem (124761786)
PubChem (124761787)
PubChem (124761788)
PubChem (124761789)
PubChem (125040358)
PubChem (125040360)
PubChem (125121198)
PubChem (129014632)
PubChem (129014634)
PubChem (129014635)
PubChem (129313238)
PubChem (152952600)
PubChem (134771120)
PubChem (162873319)
PubChem (137404838)
PubChem (161153506)
PubChem (163199098)
PubChem (164850471)
PubChem (172091638)
PubChem (173719997)
59AG, LDA, SS, TS, UP...
(QN, Y9, XD, XN, R9...)		ZINC IONnon-polymer65.46Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains112
Total formula weight4417308.4
Non-Polymers*Number of molecules680
Total formula weight17956.7
All*Total formula weight4435265.1
*Water molecules are not included.

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PDB entries from 2026-04-01

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