4KYI
Crystal structure of the phospholipase VipD from Legionella pneumophila in complex with the human GTPase Rab5
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, E, G | VipD | polymer | 551 | 61229.7 | 4 | UniProt (Q5ZRP9) Pfam (PF01734) Pfam (PF22140) In PDB | Legionella pneumophila subsp. pneumophila | |
2 | B, D, F, H | Ras-related protein Rab-5C | polymer | 170 | 18791.5 | 4 | UniProt (P51148) Pfam (PF00071) In PDB | Homo sapiens (human) | L1880, RAB5L |
3 | A, B, E, G | 1,2-ETHANEDIOL | non-polymer | 62.1 | 6 | Chemie (EDO) | |||
4 | A, E | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
5 | B, D, F, H | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 4 | Chemie (GNP) | |||
6 | B, D, F, H | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) |
Sequence modifications
A, C, E, G: 19 - 564 (UniProt: Q5ZRP9)
B, D, F, H: 18 - 182 (UniProt: P51148)
PDB | External Database | Details |
---|---|---|
Gly 14 | - | EXPRESSION TAG |
Ala 15 | - | EXPRESSION TAG |
Met 16 | - | EXPRESSION TAG |
Gly 17 | - | EXPRESSION TAG |
Ser 18 | - | EXPRESSION TAG |
PDB | External Database | Details |
---|---|---|
Gly 13 | - | EXPRESSION TAG |
Ala 14 | - | EXPRESSION TAG |
Met 15 | - | EXPRESSION TAG |
Gly 16 | - | EXPRESSION TAG |
Ser 17 | - | EXPRESSION TAG |
Leu 80 | Gln 80 | ENGINEERED MUTATION |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 320084.7 | |
Non-Polymers* | Number of molecules | 17 |
Total formula weight | 2834.7 | |
All* | Total formula weight | 322919.4 |