4KVL
Crystal structure of Oryza sativa fatty acid alpha-dioxygenase Y379F with palmitic acid
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Fatty acid alpha-oxidase | polymer | 621 | 70951.6 | 1 | UniProt (Q9M5J1) Pfam (PF03098) UniProt (by SIFTS) (Q2QRV3) In PDB | Oryza sativa (red rice) | |
2 | A | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 1 | Chemie (HEM) | |||
3 | A | PALMITIC ACID | non-polymer | 256.4 | 2 | Chemie (PLM) | |||
4 | A | CALCIUM ION | non-polymer | 40.1 | 1 | Chemie (CA) | |||
5 | A | IMIDAZOLE | non-polymer | 69.1 | 1 | Chemie (IMD) | |||
6 | A | octyl beta-D-glucopyranoside | non-polymer | 292.4 | 2 | Chemie (BOG) | |||
7 | A | PENTAETHYLENE GLYCOL | non-polymer | 238.3 | 1 | Chemie (1PE) | |||
8 | A | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 6 | Chemie (PGE) | |||
9 | A | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 1 | Chemie (PG4) | |||
10 | A | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
11 | water | water | 18.0 | 505 | Chemie (HOH) |
Sequence modifications
A: 10 - 618 (UniProt: Q9M5J1)
PDB | External Database | Details |
---|---|---|
Met -2 | - | expression tag |
Arg -1 | - | expression tag |
Gly 0 | - | expression tag |
Ser 1 | - | expression tag |
His 2 | - | expression tag |
His 3 | - | expression tag |
His 4 | - | expression tag |
His 5 | - | expression tag |
His 6 | - | expression tag |
His 7 | - | expression tag |
Gly 8 | - | expression tag |
Ser 9 | - | expression tag |
Phe 379 | Tyr 379 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 70951.6 | |
Non-Polymers* | Number of molecules | 17 |
Total formula weight | 3227.7 | |
All* | Total formula weight | 74179.3 |