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4KMU

X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Rifampin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, G, H
(A, B, F, G)
DNA-directed RNA polymerase subunit alphapolymer32936558.74UniProt (P0A7Z4)
Pfam (PF01193)
Pfam (PF01000)
Pfam (PF03118)
Escherichia coliRNAP subunit alpha, RNA polymerase subunit alpha, Transcriptase subunit alpha
2C, I
(C, H)
DNA-directed RNA polymerase subunit betapolymer1342150820.92UniProt (P0A8V2)
Pfam (PF04560)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF10385)
Pfam (PF00562)
Escherichia coliRNAP subunit beta, RNA polymerase subunit beta, Transcriptase subunit beta
3D, J
(D, I)
DNA-directed RNA polymerase subunit beta'polymer1407155366.82UniProt (P0A8T7)
Pfam (PF04997)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
Escherichia coliRNAP subunit beta', RNA polymerase subunit beta', Transcriptase subunit beta'
4E, K
(E, J)
DNA-directed RNA polymerase subunit omegapolymer9110249.52UniProt (P0A800)
Pfam (PF01192)
Escherichia coliRNAP omega subunit, RNA polymerase omega subunit, Transcriptase subunit omega
5F, L
(X, Y)
RNA polymerase sigma factor RpoDpolymer61370352.22UniProt (P00579)
Pfam (PF03979)
Pfam (PF00140)
Pfam (PF04546)
Pfam (PF04542)
Pfam (PF04539)
Pfam (PF04545)
Escherichia coliSigma-70
6M, Q
(C, H)
RIFAMPICINnon-polymer822.92Chemie (RFP)
7N, O, R, S
(D, I)
ZINC IONnon-polymer65.44Chemie (ZN)
8P, T
(D, I)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight919813.6
Non-Polymers*Number of molecules8
Total formula weight1956.1
All*Total formula weight921769.7
*Water molecules are not included.

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PDB entries from 2025-06-11

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