4KBB
Structure of Botulinum neurotoxin B binding domain in complex with both synaptotagmin II and GD1a
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Botulinum neurotoxin type B | polymer | 459 | 54915.8 | 2 | UniProt (P10844) Pfam (PF07953) Pfam (PF07951) In PDB | Clostridium botulinum | BoNT/B, Bontoxilysin-B, Botulinum neurotoxin B light chain, Botulinum neurotoxin B heavy chain |
2 | C, D | Synaptotagmin-2 | polymer | 68 | 7556.2 | 2 | UniProt (P46097) In PDB | Mus musculus (mouse) | Synaptotagmin II, SytII |
3 | E, F | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 1290.1 | 2 | In PDB GlyTouCan (G46677TE) | |||
4 | A, B | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
5 | B | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
6 | water | water | 18.0 | 264 | Chemie (HOH) |
Sequence modifications
A, B: 857 - 1291 (UniProt: P10844)
C, D: 8 - 61 (UniProt: P46097)
PDB | External Database | Details |
---|---|---|
Met 833 | - | expression tag |
Gly 834 | - | expression tag |
Ser 835 | - | expression tag |
Ser 836 | - | expression tag |
His 837 | - | expression tag |
His 838 | - | expression tag |
His 839 | - | expression tag |
His 840 | - | expression tag |
His 841 | - | expression tag |
His 842 | - | expression tag |
Ser 843 | - | expression tag |
Ser 844 | - | expression tag |
Gly 845 | - | expression tag |
Leu 846 | - | expression tag |
Val 847 | - | expression tag |
Pro 848 | - | expression tag |
Arg 849 | - | expression tag |
Gly 850 | - | expression tag |
Ser 851 | - | expression tag |
His 852 | - | expression tag |
Met 853 | - | expression tag |
Ala 854 | - | expression tag |
Ser 855 | - | expression tag |
Met 856 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Glu 3 | - | expression tag |
Gly 4 | - | expression tag |
Trp 5 | - | expression tag |
Thr 6 | - | expression tag |
Glu 7 | - | expression tag |
Val 62 | - | expression tag |
Leu 63 | - | expression tag |
Glu 64 | - | expression tag |
His 65 | - | expression tag |
His 66 | - | expression tag |
His 67 | - | expression tag |
His 68 | - | expression tag |
His 69 | - | expression tag |
His 70 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 124944.0 | |
Branched | Number of molecules | 2 |
Total formula weight | 2580.3 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 95.2 | |
All* | Total formula weight | 127619.5 |