4K8Z
KOD Polymerase in binary complex with dsDNA
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | DNA polymerase | polymer | 774 | 90060.5 | 1 | UniProt (P77933) Pfam (PF03104) Pfam (PF00136) In PDB | Thermococcus kodakarensis | |
2 | T | DNA (5'-D(*AP*AP*AP*TP*TP*CP*GP*CP*AP*GP*TP*TP*CP*GP*CP*G)-3') | polymer | 16 | 4898.2 | 1 | |||
3 | P | DNA (5'-D(*CP*GP*CP*GP*AP*AP*CP*TP*GP*CP*GP*(2DA))-3') | polymer | 12 | 3656.4 | 1 | |||
4 | A | COBALT HEXAMMINE(III) | non-polymer | 161.1 | 1 | Chemie (NCO) | |||
5 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
6 | T | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
7 | water | water | 18.0 | 367 | Chemie (HOH) |
Sequence modifications
A: 1 - 406 (UniProt: P77933)
A: 407 - 491 (UniProt: P77933)
A: 492 - 774 (UniProt: P77933)
PDB | External Database | Details |
---|---|---|
Ala 141 | Asp 141 | engineered mutation |
Ala 143 | Glu 143 | engineered mutation |
A: 492 - 774 (UniProt: P77933)
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 98615.1 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 309.6 | |
All* | Total formula weight | 98924.6 |