4K0K
Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S ribosomal RNA | polymer | 1517 | 492372.5 | 1 | GenBank (55771382) | Thermus thermophilus | |
| 2 | B (B) | 30S ribosomal protein S2 | polymer | 235 | 27116.4 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus | |
| 3 | C (C) | 30S ribosomal protein S3 | polymer | 207 | 22975.6 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus | |
| 4 | D (D) | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
| 5 | E (E) | 30S ribosomal protein S5 | polymer | 151 | 16460.2 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus | |
| 6 | F (F) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus | |
| 7 | G (G) | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
| 8 | H (H) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus | |
| 9 | I (I) | 30S ribosomal protein S9 | polymer | 127 | 14298.5 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus | |
| 10 | J (J) | 30S ribosomal protein S10 | polymer | 99 | 11398.3 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus | |
| 11 | K (K) | 30S ribosomal protein S11 | polymer | 119 | 12606.4 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus | |
| 12 | L (L) | 30S ribosomal protein S12 | polymer | 126 | 14004.6 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus | |
| 13 | M (M) | 30S ribosomal protein S13 | polymer | 121 | 13753.1 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus | |
| 14 | N (N) | 30S ribosomal protein S14 | polymer | 60 | 7027.5 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus | |
| 15 | O (O) | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus | |
| 16 | P (P) | 30S ribosomal protein S16 | polymer | 84 | 9995.5 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus | |
| 17 | Q (Q) | 30S ribosomal protein S17 | polymer | 100 | 11880.1 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus | |
| 18 | R (R) | 30S ribosomal protein S18 | polymer | 70 | 8155.8 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus | |
| 19 | S (S) | 30S ribosomal protein S19 | polymer | 79 | 9006.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus | |
| 20 | T (T) | 30S ribosomal protein S20 | polymer | 99 | 10921.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus | |
| 21 | U (U) | 30S ribosomal protein THX | polymer | 25 | 3089.7 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Synthetic construct | |
| 22 | V (X) | mRNA | polymer | 5 | 1571.0 | 1 | Synthetic construct | ||
| 23 | W (Y) | RNA-ASL | polymer | 11 | 3477.1 | 1 | Thermus thermophilus |
Sequence modifications
A: 6 - 1522 (GenBank: 55771382)
I: 2 - 128 (UniProt: P80374)
| PDB | External Database | Details |
|---|---|---|
| A 79 | G 131378 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 58 | His 58 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 23 |
| Total formula weight | 770576.3 | |
| All* | Total formula weight | 770576.3 |
