4JCF
S268F Variant of JC Polyomavirus Major Capsid Protein VP1 in Complex with LSTc
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | C, A, B, D, E | Major capsid protein VP1 | polymer | 272 | 30136.0 | 5 | UniProt (P03089) Pfam (PF00718) In PDB | JC polyomavirus (JCPyV) | Major structural protein VP1 |
2 | F | N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 674.6 | 1 | In PDB BIRD (PRD_900046) GlyTouCan (G73578JC) | 6'-sialyl-N-acetyllactosamine | ||
3 | C, A, B, D, E | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
4 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
5 | water | water | 18.0 | 838 | Chemie (HOH) |
Sequence modifications
C, A, B, D, E: 22 - 289 (UniProt: P03089)
PDB | External Database | Details |
---|---|---|
Gly 18 | - | expression tag |
Ser 19 | - | expression tag |
His 20 | - | expression tag |
Met 21 | - | expression tag |
Phe 268 | Ser 269 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 150679.8 | |
Branched | Number of molecules | 1 |
Total formula weight | 674.6 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 522.5 | |
All* | Total formula weight | 151876.9 |