4JCF
S268F Variant of JC Polyomavirus Major Capsid Protein VP1 in Complex with LSTc
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (C, A, B, D, E) | Major capsid protein VP1 | polymer | 272 | 30136.0 | 5 | UniProt (P03089) Pfam (PF00718) | JC polyomavirus (JCPyV) | Major structural protein VP1 |
| 2 | F (F) | N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 674.6 | 1 | In PDB BIRD (PRD_900046) GlyTouCan (G73578JC) | 6'-sialyl-N-acetyllactosamine | ||
| 3 | G, H, J, K, L (C, A, B, D, E) | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
| 4 | I (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
| 5 | M, N, O, P, Q (C, A, B, D, E) | water | water | 18.0 | 838 | Chemie (HOH) |
Sequence modifications
C, A, B, D, E: 22 - 289 (UniProt: P03089)
| PDB | External Database | Details |
|---|---|---|
| Gly 18 | - | expression tag |
| Ser 19 | - | expression tag |
| His 20 | - | expression tag |
| Met 21 | - | expression tag |
| Phe 268 | Ser 269 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 150679.8 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 674.6 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 522.5 | |
| All* | Total formula weight | 151876.9 |
