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4IYO

Crystal structure of cystathionine gamma lyase from Xanthomonas oryzae pv. oryzae (XometC) in complex with E-site serine, A-site serine, A-site external aldimine structure with aminoacrylate and A-site iminopropionate intermediates

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Cystathionine gamma-lyase-like proteinpolymer39742635.61UniProt (Q5H4T8)
Pfam (PF01053)
Xanthomonas oryzae pv. oryzae
2B, C, D
(B, C, D)
Cystathionine gamma-lyase-like protein, LYS201A modifiedpolymer39742863.73UniProt (Q5H4T8)
Pfam (PF01053)
Xanthomonas oryzae pv. oryzae
3E, I, L, O, P
(A, B, C, D)
SERINEnon-polymer105.15Chemie (SER)
4F, N, Q
(A, C, D)
GLYCEROLnon-polymer92.13Chemie (GOL)
5G
(A)
SULFATE IONnon-polymer96.11Chemie (SO4)
6H
(A)
2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acidnon-polymer316.21Chemie (0JO)
7J, M
(B, C)
AMINO-ACRYLATEnon-polymer87.12Chemie (NAK)
8K
(B)
PYRUVIC ACIDnon-polymer88.11Chemie (PYR)
9R, S, T, U
(A, B, C, D)
waterwater18.01324Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight171226.7
Non-Polymers*Number of molecules13
Total formula weight1476.2
All*Total formula weight172702.9
*Water molecules are not included.

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PDB entries from 2025-12-24

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