4IJG
Crystal structure of monomeric bacteriophytochrome
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Bacteriophytochrome | polymer | 341 | 36991.0 | 1 | UniProt (Q9RZA4) Pfam (PF08446) Pfam (PF01590) In PDB | Deinococcus radiodurans | Phytochrome-like protein |
2 | A | 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid | non-polymer | 585.7 | 1 | Chemie (LBV) | |||
3 | A | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
4 | A | PHOSPHATE ION | non-polymer | 95.0 | 1 | Chemie (PO4) | |||
5 | A | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
6 | water | water | 18.0 | 211 | Chemie (HOH) |
Sequence modifications
A: 3 - 323 (UniProt: Q9RZA4)
PDB | External Database | Details |
---|---|---|
Met -11 | - | expression tag |
Ala -10 | - | expression tag |
Ser -9 | - | expression tag |
Met -8 | - | expression tag |
Thr -7 | - | expression tag |
Gly -6 | - | expression tag |
Gly -5 | - | expression tag |
Gln -4 | - | expression tag |
Gln -3 | - | expression tag |
Met -2 | - | expression tag |
Gly -1 | - | expression tag |
Arg 0 | - | expression tag |
Gly 1 | - | expression tag |
Ser 2 | - | expression tag |
- | Pro 5 | deletion |
- | Leu 6 | deletion |
Ser 145 | Phe 145 | conflict |
Glu 311 | Leu 311 | conflict |
Glu 314 | Leu 314 | conflict |
Leu 322 | Ala 322 | conflict |
Glu 323 | Asp 323 | conflict |
His 324 | - | expression tag |
His 325 | - | expression tag |
His 326 | - | expression tag |
His 327 | - | expression tag |
His 328 | - | expression tag |
His 329 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 36991.0 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 970.9 | |
All* | Total formula weight | 37962.0 |