4HJ1
Crystal structure of glycoprotein C from Rift Valley Fever Virus (glycosylated)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | ENVELOPE GLYCOPROTEIN | polymer | 432 | 46952.7 | 4 | UniProt (A2T075) Pfam (PF07245) Pfam (PF19019) UniProt (by SIFTS) (P03518) | Rift Valley fever virus (RVFV) | GP, M polyprotein, Non-structural protein NSm, Glycoprotein G1, Glycoprotein G2 |
| 2 | E (E) | beta-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G40894EI) | |||
| 3 | F (F) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 4 | G, H (G, H) | beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 2 | In PDB GlyTouCan (G89225LT) | |||
| 5 | I, L, O, R (A, B, C, D) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) | |||
| 6 | J, M, P, S, T (A, B, C, D) | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID | non-polymer | 195.2 | 5 | Chemie (MES) | |||
| 7 | K, N, Q, U, V (A, B, C, D) | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
| 8 | W, X, Y, Z (A, B, C, D) | water | water | 18.0 | 937 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 691 - 1119 (UniProt: A2T075)
| PDB | External Database | Details |
|---|---|---|
| Asp 688 | - | expression tag |
| Pro 689 | - | expression tag |
| Gly 690 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 187810.7 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 3156.9 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 2321.5 | |
| All* | Total formula weight | 193289.1 |
