4FMI
Merkel cell polyomavirus VP1 in complex with 3'-sialyllactosamine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | VP1 | polymer | 289 | 31927.2 | 20 | UniProt (C0JPK1) Pfam (PF00718) | Merkel cell polyomavirus | |
| 2 | U (U) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 674.6 | 1 | In PDB BIRD (PRD_900067) GlyTouCan (G00065MO) | 3'-sialyl-N-acetyllactosamine | ||
| 3 | V (V) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose | branched | 471.4 | 1 | In PDB GlyTouCan (G30207PZ) | |||
| 4 | AA, AB, CA, CB, EB... (C, M, D, N, O...) | GLYCEROL | non-polymer | 92.1 | 25 | Chemie (GOL) | |||
| 5 | BA, BB, DA, DB, FB... (C, M, D, N, O...) | CHLORIDE ION | non-polymer | 35.5 | 21 | Chemie (CL) | |||
| 6 | EA, YA (E, M) | N-acetyl-alpha-neuraminic acid | non-polymer | 309.3 | 2 | Chemie (SIA) | |||
| 7 | AC, BC, CC, DC, EC... (I, J, K, L, M...) | water | water | 18.0 | 3677 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T: 38 - 320 (UniProt: C0JPK1)
| PDB | External Database | Details |
|---|---|---|
| Gly 32 | - | expression tag |
| Ser 33 | - | expression tag |
| His 34 | - | expression tag |
| Met 35 | - | expression tag |
| Leu 36 | - | expression tag |
| Glu 37 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 20 |
| Total formula weight | 638543.1 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1146.0 | |
| Non-Polymers* | Number of molecules | 48 |
| Total formula weight | 3665.4 | |
| All* | Total formula weight | 643354.5 |
