4F7C

Crystal structure of bovine CD1d with bound C12-di-sulfatide

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, C (A, C)	CD1D antigen, d polypeptide	polymer	283	32460.6	2	UniProt (A1L565) Pfam (PF16497) Pfam (PF07654)	Bos taurus (bovine)	T cell surface glycoprotein CD1d antigen
2	B, D (B, D)	Beta-2-microglobulin	polymer	98	11653.1	2	UniProt (P01888) Pfam (PF07654)	Bos taurus (bovine)	Lactollin
3	E (E)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	1	In PDB GlyTouCan (G42666HT)
4	F, G (F, G)	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		586.5	2	In PDB GlyTouCan (G15407YE)
5	H (H)	beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		748.7	1	In PDB GlyTouCan (G31886NL)
6	I, J (A, C)	N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide	non-polymer		804.1	2	Chemie (0SG)
7	K, L, M, N (A, B, C, D)	water	water		18.0	29	Chemie (HOH)

Sequence modifications

A, C: 1 - 277 (UniProt: A1L565)

PDB	External Database	Details
His 278	-	expression tag
His 279	-	expression tag
His 280	-	expression tag
His 281	-	expression tag
His 282	-	expression tag
His 283	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	4
	Total formula weight	88227.4
Branched	Number of molecules	4
	Total formula weight	2346.2
Non-Polymers*	Number of molecules	2
	Total formula weight	1608.1
All*	Total formula weight	92181.7

*Water molecules are not included.