4F7C
Crystal structure of bovine CD1d with bound C12-di-sulfatide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C | CD1D antigen, d polypeptide | polymer | 283 | 32460.6 | 2 | UniProt (A1L565) Pfam (PF16497) Pfam (PF07654) In PDB | Bos taurus (bovine) | T cell surface glycoprotein CD1d antigen |
2 | B, D | Beta-2-microglobulin | polymer | 98 | 11653.1 | 2 | UniProt (P01888) Pfam (PF07654) In PDB | Bos taurus (bovine) | Lactollin |
3 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
4 | F, G | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G15407YE) | |||
5 | H | beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G31886NL) | |||
6 | A, C | N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide | non-polymer | 804.1 | 2 | Chemie (0SG) | |||
7 | water | water | 18.0 | 29 | Chemie (HOH) |
Sequence modifications
A, C: 1 - 277 (UniProt: A1L565)
PDB | External Database | Details |
---|---|---|
His 278 | - | expression tag |
His 279 | - | expression tag |
His 280 | - | expression tag |
His 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 88227.4 | |
Branched | Number of molecules | 4 |
Total formula weight | 2346.2 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 1608.1 | |
All* | Total formula weight | 92181.7 |