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4F6W

Crystal structure of human CDK8/CYCC in complex with compound 1 (N-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-4-[2-({[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]carbamoyl}amino)ethyl]piperazine-1-carboxamide)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ACyclin-dependent kinase 8polymer40546990.81UniProt (P49336)
Pfam (PF00069)
In PDB
Homo sapiens (human)Cell division protein kinase 8, Mediator complex subunit CDK8, Mediator of RNA polymerase II transcription subunit CDK8, Protein kinase K35
2BCyclin-Cpolymer28733710.11UniProt (P24863)
Pfam (PF00134)
Pfam (PF16899)
In PDB
Homo sapiens (human)SRB11 homolog, hSRB11
3AN-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-4-[2-({[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]carbamoyl}amino)ethyl]piperazine-1-carboxamidenon-polymer639.81Chemie (0SS)
4ADIMETHYL SULFOXIDEnon-polymer78.11Chemie (DMS)
5A, B1,2-ETHANEDIOLnon-polymer62.19Chemie (EDO)
6A, BFORMIC ACIDnon-polymer46.05Chemie (FMT)
7waterwater18.0150Chemie (HOH)
Sequence modifications
A: 1 - 403 (UniProt: P49336)
PDBExternal DatabaseDetails
Asp -1-expression tag
Lys 0-expression tag
B: 1 - 283 (UniProt: P24863)
PDBExternal DatabaseDetails
Asp -3-expression tag
Asp -2-expression tag
Lys -1-expression tag
Ala 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight80700.9
Non-Polymers*Number of molecules16
Total formula weight1506.7
All*Total formula weight82207.6
*Water molecules are not included.

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PDB entries from 2024-08-28

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