4F6W
Crystal structure of human CDK8/CYCC in complex with compound 1 (N-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-4-[2-({[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]carbamoyl}amino)ethyl]piperazine-1-carboxamide)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Cyclin-dependent kinase 8 | polymer | 405 | 46990.8 | 1 | UniProt (P49336) Pfam (PF00069) In PDB | Homo sapiens (human) | Cell division protein kinase 8, Mediator complex subunit CDK8, Mediator of RNA polymerase II transcription subunit CDK8, Protein kinase K35 |
2 | B | Cyclin-C | polymer | 287 | 33710.1 | 1 | UniProt (P24863) Pfam (PF00134) Pfam (PF16899) In PDB | Homo sapiens (human) | SRB11 homolog, hSRB11 |
3 | A | N-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-4-[2-({[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]carbamoyl}amino)ethyl]piperazine-1-carboxamide | non-polymer | 639.8 | 1 | Chemie (0SS) | |||
4 | A | DIMETHYL SULFOXIDE | non-polymer | 78.1 | 1 | Chemie (DMS) | |||
5 | A, B | 1,2-ETHANEDIOL | non-polymer | 62.1 | 9 | Chemie (EDO) | |||
6 | A, B | FORMIC ACID | non-polymer | 46.0 | 5 | Chemie (FMT) | |||
7 | water | water | 18.0 | 150 | Chemie (HOH) |
Sequence modifications
A: 1 - 403 (UniProt: P49336)
B: 1 - 283 (UniProt: P24863)
PDB | External Database | Details |
---|---|---|
Asp -1 | - | expression tag |
Lys 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Asp -3 | - | expression tag |
Asp -2 | - | expression tag |
Lys -1 | - | expression tag |
Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 80700.9 | |
Non-Polymers* | Number of molecules | 16 |
Total formula weight | 1506.7 | |
All* | Total formula weight | 82207.6 |