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4DW4

Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with 5'-UMP

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
E(rns) glycoproteinpolymer16719005.52UniProt (Q96662)Bovine viral diarrhea virus (BVDV)
2C, F
(C, F)
alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched910.82In PDB
GlyTouCan (G51945PF)
3D, E, H, I
(D, E, H, I)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.44In PDB
GlyTouCan (G42666HT)
4G
(G)
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched1073.01In PDB
GlyTouCan (G89333WS)
5J, O, P
(A, B)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.23Chemie (NAG)
6K, L, Q
(A, B)
SULFATE IONnon-polymer96.13Chemie (SO4)
7M, N, R, S
(A, B)
URIDINE-5'-MONOPHOSPHATEnon-polymer324.24Chemie (U5P)
8T, U
(A, B)
waterwater18.0265Chemie (HOH)
Sequence modifications
A, B: 3 - 167 (UniProt: Q96662)
PDBExternal DatabaseDetails
Arg 1-expression tag
Ser 2-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight38011.0
BranchedNumber of molecules7
Total formula weight4592.2
Non-Polymers*Number of molecules10
Total formula weight2248.5
All*Total formula weight44851.7
*Water molecules are not included.

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PDB entries from 2024-11-13

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