4DR5
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | 16S rRNA | polymer | 1522 | 494170.8 | 1 | GenBank (M26923.1) | Thermus thermophilus | |
2 | B | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) In PDB | Thermus thermophilus | |
3 | C | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB | Thermus thermophilus | |
4 | D | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB | Thermus thermophilus | |
5 | E | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus | |
6 | F | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) In PDB | Thermus thermophilus | |
7 | G | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) In PDB | Thermus thermophilus | |
8 | H | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) In PDB | Thermus thermophilus | |
9 | I | 30S ribosomal protein S9 | polymer | 128 | 14410.6 | 1 | UniProt (P80374) Pfam (PF00380) In PDB | Thermus thermophilus | |
10 | J | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) In PDB | Thermus thermophilus | |
11 | K | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) In PDB | Thermus thermophilus | |
12 | L | 30S ribosomal protein S12 | polymer | 135 | 14966.8 | 1 | UniProt (F6DEQ7) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) In PDB | Thermus thermophilus | |
13 | M | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) In PDB | Thermus thermophilus | |
14 | N | 30S ribosomal protein S14 | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) In PDB | Thermus thermophilus | |
15 | O | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) In PDB | Thermus thermophilus | |
16 | P | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) In PDB | Thermus thermophilus | |
17 | Q | 30S ribosomal protein S17 | polymer | 105 | 12324.7 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) In PDB | Thermus thermophilus | |
18 | R | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) In PDB | Thermus thermophilus | |
19 | S | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) In PDB | Thermus thermophilus | |
20 | T | 30S ribosomal protein S20 | polymer | 106 | 11736.1 | 1 | UniProt (P80380) Pfam (PF01649) In PDB | Thermus thermophilus | |
21 | U | 30S ribosomal protein THX | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | Thermus thermophilus | |
22 | V | 5'-R(*UP*UP*U)-3' | polymer | 3 | 873.5 | 1 | Thermus thermophilus | ||
23 | W | 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' | polymer | 15 | 4815.9 | 1 | Thermus thermophilus | ||
24 | A, E, F, G, H... | MAGNESIUM ION | non-polymer | 24.3 | 272 | Chemie (MG) | |||
25 | A | STREPTOMYCIN | non-polymer | 581.6 | 1 | Chemie (SRY) | |||
26 | N, D | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
27 | water | water | 18.0 | 582 | Chemie (HOH) |
Sequence modifications
A: 0 - 1544 (GenBank: M26923.1)
Q: 1 - 105 (UniProt: Q5SHP7)
PDB | External Database | Details |
---|---|---|
C 1534 | A 2157 | CONFLICT |
A 1535 | C 2158 | CONFLICT |
PDB | External Database | Details |
---|---|---|
Gln 96 | Glu 96 | CONFLICT |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 23 |
Total formula weight | 789625.1 | |
Non-Polymers* | Number of molecules | 275 |
Total formula weight | 7323.4 | |
All* | Total formula weight | 796948.4 |