4DPW
Crystal structure of Staphylococcus epidermidis D283A mevalonate diphosphate decarboxylase complexed with mevalonate diphosphate and ATPgS
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D, E... | Mevalonate diphosphate decarboxylase | polymer | 332 | 36826.4 | 8 | UniProt (Q9FD73) Pfam (PF22700) Pfam (PF18376) In PDB | Staphylococcus epidermidis | |
2 | H, A, B, C, D... | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | non-polymer | 523.2 | 8 | Chemie (AGS) | |||
3 | H, A, B, C, D... | (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID | non-polymer | 308.1 | 8 | Chemie (DP6) | |||
4 | H, A, D, E | FORMIC ACID | non-polymer | 46.0 | 4 | Chemie (FMT) | |||
5 | E | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
6 | water | water | 18.0 | 248 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H: 1 - 327 (UniProt: Q9FD73)
PDB | External Database | Details |
---|---|---|
Gly -4 | - | expression tag |
Ser -3 | - | expression tag |
Thr -2 | - | expression tag |
Gly -1 | - | expression tag |
Ser 0 | - | expression tag |
Ala 283 | Asp 283 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 294611.1 | |
Non-Polymers* | Number of molecules | 21 |
Total formula weight | 6927.1 | |
All* | Total formula weight | 301538.2 |