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4D6D

Crystal structure of a family 98 glycoside hydrolase catalytic module (Sp3GH98) in complex with the blood group A-trisaccharide (X02 mutant)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
GLYCOSIDE HYDROLASEpolymer59969093.61UniProt (A5LBQ0)STREPTOCOCCUS PNEUMONIAE
2B
(B)
alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranosebranched529.51In PDB
GlyTouCan (G00066MO)
3C, D, E
(A)
1,2-ETHANEDIOLnon-polymer62.13Chemie (EDO)
4F
(A)
waterwater18.0989Chemie (HOH)
Sequence modifications
A: 421 - 1003 (UniProt: A5LBQ0)
PDBExternal DatabaseDetails
Leu 1004-expression tag
Glu 1005-expression tag
His 1006-expression tag
Thr 1007-expression tag
Arg 1008-expression tag
Ala 1009-expression tag
Pro 1010-expression tag
Pro 1011-expression tag
Pro 1012-expression tag
Pro 1013-expression tag
Pro 1014-expression tag
Leu 1015-expression tag
Arg 1016-expression tag
Ser 1017-expression tag
Gly 1018-expression tag
Cys 1019-expression tag
Ser 559Asn 561engineered mutation
Ser 592Asn 594engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight69093.6
BranchedNumber of molecules1
Total formula weight529.5
Non-Polymers*Number of molecules3
Total formula weight186.2
All*Total formula weight69809.3
*Water molecules are not included.

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PDB entries from 2025-06-11

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