4D67
Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 60S RIBOSOMAL PROTEIN L8 | polymer | 257 | 28088.9 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL2 | |
| 2 | B (B) | 60S RIBOSOMAL PROTEIN L3 | polymer | 403 | 46211.1 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL3, HIV-1 TAR RNA-BINDING PROTEIN B, TARBP-B | |
| 3 | C (C) | 60S RIBOSOMAL PROTEIN L4 | polymer | 427 | 47804.6 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL4 | |
| 4 | D (D) | 60S RIBOSOMAL PROTEIN L5 | polymer | 297 | 34426.8 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL18 | |
| 5 | E (E) | 60S RIBOSOMAL PROTEIN L6 | polymer | 288 | 32810.2 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL6, NEOPLASM-RELATED PROTEIN C140, TAX-RESPONSIVE ENHANCER ELEM ENT-BINDING PROTEIN 107, TAXREB107 | |
| 6 | F (F) | 60S RIBOSOMAL PROTEIN L7 | polymer | 248 | 29291.0 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL30 | |
| 7 | G (G) | 60S RIBOSOMAL PROTEIN L7A | polymer | 266 | 30061.8 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL8, PLA-X POLYPEPTIDE, SURFEIT LOCUS PROTEIN 3 | |
| 8 | H (H) | 60S RIBOSOMAL PROTEIN L9 | polymer | 192 | 21899.5 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL6 | |
| 9 | I (I) | 60S RIBOSOMAL PROTEIN L10 | polymer | 214 | 24657.1 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL16, LAMININ RECEPTOR HOMOLOG, PROTEIN QM, TUMOR SUPPRESSOR QM | |
| 10 | J (J) | 60S RIBOSOMAL PROTEIN L11 | polymer | 178 | 20288.5 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL5, CLL-ASSOCIATED ANTIGEN KW-12 | |
| 11 | K (L) | 60S RIBOSOMAL PROTEIN L13 | polymer | 211 | 24321.7 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL13, BREAST BASIC CONSERVED PROTEIN 1 | |
| 12 | L (M) | 60S RIBOSOMAL PROTEIN L14 | polymer | 215 | 23485.0 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL14, CAG-ISL 7 | |
| 13 | M (N) | 60S RIBOSOMAL PROTEIN L15 | polymer | 204 | 24207.3 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL15 | |
| 14 | N (O) | 60S RIBOSOMAL PROTEIN L13A | polymer | 203 | 23633.4 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL13,23 KDA HIGHLY BASIC PROTEIN | |
| 15 | O (P) | 60S RIBOSOMAL PROTEIN L17 | polymer | 184 | 21443.2 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL22,60S RIBOSOMAL PROTEIN L23, PD-1 | |
| 16 | P (Q) | 60S RIBOSOMAL PROTEIN L18 | polymer | 188 | 21687.7 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL18 | |
| 17 | Q (R) | 60S RIBOSOMAL PROTEIN L19 | polymer | 196 | 23535.3 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL19 | |
| 18 | R (S) | 60S RIBOSOMAL PROTEIN L18A | polymer | 176 | 20808.5 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL20 | |
| 19 | S (T) | 60S RIBOSOMAL PROTEIN L21 | polymer | 160 | 18610.0 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL21 | |
| 20 | T (U) | 60S RIBOSOMAL PROTEIN L22 | polymer | 128 | 14813.0 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL22, EBER-ASSOCIATED PROTEIN, EAP, EPSTEIN-BARR VIRUS SMALL RNA- ASSOCIATED PROTEIN, HEPARIN-BINDING PROTEIN HBP15 | |
| 21 | U (V) | 60S RIBOSOMAL PROTEIN L23 | polymer | 140 | 14892.5 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL14,60S RIBOSOMAL PROTEIN L17 | |
| 22 | V (W) | 60S RIBOSOMAL PROTEIN L24 | polymer | 157 | 17825.1 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL24,60S RIBOSOMAL PROTEIN L30 | |
| 23 | W (X) | 60S RIBOSOMAL PROTEIN L23A | polymer | 156 | 17740.2 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL23 | |
| 24 | X (Y) | 60S RIBOSOMAL PROTEIN L26 | polymer | 145 | 17303.4 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL24 | |
| 25 | Y (Z) | 60S RIBOSOMAL PROTEIN L27 | polymer | 136 | 15835.8 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL27 | |
| 26 | Z (a) | 60S RIBOSOMAL PROTEIN L27A | polymer | 148 | 16604.5 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL15 | |
| 27 | AA (b) | 60S RIBOSOMAL PROTEIN L29 | polymer | 159 | 17804.3 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL29, CELL SURFACE HEPARIN-BINDING PROTEIN HIP | |
| 28 | BA (c) | 60S RIBOSOMAL PROTEIN L30 | polymer | 115 | 12805.1 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL30 | |
| 29 | CA (d) | 60S RIBOSOMAL PROTEIN L31 | polymer | 125 | 14494.9 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL31 | |
| 30 | DA (e) | 60S RIBOSOMAL PROTEIN L32 | polymer | 135 | 15898.9 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL32 | |
| 31 | EA (f) | 60S RIBOSOMAL PROTEIN L35A | polymer | 110 | 12564.7 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL33, CELL GROWTH-INHIBITING GENE 33 PROTEIN | |
| 32 | FA (g) | 60S RIBOSOMAL PROTEIN L34 | polymer | 117 | 13326.1 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL34 | |
| 33 | GA (h) | 60S RIBOSOMAL PROTEIN L35 | polymer | 123 | 14593.6 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL29 | |
| 34 | HA (i) | 60S RIBOSOMAL PROTEIN L36 | polymer | 105 | 12290.9 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL36 | |
| 35 | IA (j) | 60S RIBOSOMAL PROTEIN L37 | polymer | 97 | 11111.0 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL37, G1.16 | |
| 36 | JA (k) | 60S RIBOSOMAL PROTEIN L38 | polymer | 70 | 8238.9 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL38 | |
| 37 | KA (l) | 60S RIBOSOMAL PROTEIN L39 | polymer | 51 | 6426.8 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL39 | |
| 38 | LA (m) | UBIQUITIN-60S RIBOSOMAL PROTEIN L40 | polymer | 128 | 14758.4 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL40, EP52, UBIQUITIN A-52 RESIDUE RIBOSOMAL PROTEIN FUSION PRODUCT 1 | |
| 39 | MA (n) | 60S RIBOSOMAL PROTEIN L41 | polymer | 25 | 3473.5 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL41, HG12 | |
| 40 | NA (o) | 60S RIBOSOMAL PROTEIN L36A | polymer | 106 | 12477.0 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL44,60S RIBOSOMAL PROTEIN L44, CELL GROWTH-INHIBITING GENE 15 PROTEIN, CELL MIGRATION-INDUCING GENE 6 PROTEIN | |
| 41 | OA (p) | 60S RIBOSOMAL PROTEIN L37A | polymer | 92 | 10299.4 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL43 | |
| 42 | PA (t) | 60S RIBOSOMAL PROTEIN L28 | polymer | 137 | 15784.6 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN EL28 | |
| 43 | QA (u) | 60S RIBOSOMAL PROTEIN L10A | polymer | 210 | 23174.5 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | 60S RIBOSOMAL PROTEIN UL1, CSA-19, NEURAL PRECURSOR CELL EXPRESSED DEVELOPMENTALLY DOWN-REGULATED PROTEIN 6, NEDD-6 | |
| 44 | RA (2) | 28S RRNA | polymer | 5025 | 1625917.6 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | ||
| 45 | SA (3) | 5.8S RRNA | polymer | 194 | 62616.3 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) | ||
| 46 | TA (4) | 5S RRNA | polymer | 121 | 38998.1 | 1 | ORYCTOLAGUS CUNICULUS (RABBIT) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 46 |
| Total formula weight | 2579340.5 | |
| All* | Total formula weight | 2579340.5 |
