4CDM
Crystal structure of M. mazei photolyase soaked with synthetic 8-HDF
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | DEOXYRIBODIPYRIMIDINE PHOTOLYASE | polymer | 482 | 55123.5 | 1 | UniProt (Q8PYK9) Pfam (PF00875) | METHANOSARCINA MAZEI | CLASS II CPD PHOTOLYASE |
| 2 | B (A) | FLAVIN-ADENINE DINUCLEOTIDE | non-polymer | 785.5 | 1 | Chemie (FAD) | |||
| 3 | C (A) | 1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol | non-polymer | 363.3 | 1 | Chemie (FO1) | |||
| 4 | D, E, F, G (A) | SULFATE ION | non-polymer | 96.1 | 4 | Chemie (SO4) | |||
| 5 | H, I (A) | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
| 6 | J (A) | water | water | 18.0 | 33 | Chemie (HOH) |
Sequence modifications
A: 3 - 464 (UniProt: Q8PYK9)
| PDB | External Database | Details |
|---|---|---|
| Met -17 | - | expression tag |
| Gly -16 | - | expression tag |
| Ser -15 | - | expression tag |
| Ser -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| Ser -7 | - | expression tag |
| Ser -6 | - | expression tag |
| Gly -5 | - | expression tag |
| Leu -4 | - | expression tag |
| Val -3 | - | expression tag |
| Pro -2 | - | expression tag |
| Arg -1 | - | expression tag |
| Gly 0 | - | expression tag |
| Ser 1 | - | expression tag |
| His 2 | - | expression tag |
| Thr 377 | Met 377 | cloning artifact |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 55123.5 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 1717.3 | |
| All* | Total formula weight | 56840.8 |
