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4APZ

Structure of B. subtilis genomic dUTPase YncF in complex with dU, PPi and Mg in P1

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, AA, B, BA, C...
(1, 2, 3, 4, 5...)
PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YNCFpolymer14416431.848UniProt (O31801)
Pfam (PF00692)
BACILLUS SUBTILISDUTPASE, DUTP PYROPHOSPHATASE
2AC, AF, BD, CB, CE...
(B, b, K, 3, T...)
2'-DEOXYURIDINEnon-polymer228.248Chemie (DUR)
3AB, AE, AG, BC, BF...
(2, S, j, B, b...)
PYROPHOSPHATE 2-non-polymer176.048Chemie (POP)
4AD, BB, BE, BG, CC...
(J, 2, S, j, B...)
MAGNESIUM IONnon-polymer24.348Chemie (MG)
5IG, MF
(l, e)
PHOSPHATE IONnon-polymer95.02Chemie (PO4)
6AH, AI, BH, BI, CH...
(E, d, F, e, G...)
waterwater18.04726Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains48
Total formula weight788724.5
Non-Polymers*Number of molecules146
Total formula weight20756.3
All*Total formula weight809480.8
*Water molecules are not included.

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PDB entries from 2025-06-18

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