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4A3I

RNA Polymerase II binary complex with DNA

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1polymer1732191664.41UniProt (P04050)
Pfam (PF04997)
Pfam (PF05001)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
Pfam (PF04992)
Pfam (PF04990)
SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RPB1, RNA POLYMERASE II SUBUNIT 1, RNA POLYMERASE II SUBUNIT B1, DNA-DIRECTED RNA POLYMERASE III LARGEST SUBUNIT, RNA POLYMERASE II SUBUNIT B220
2B
(B)
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2polymer1224138937.31UniProt (P08518)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF04566)
Pfam (PF04567)
Pfam (PF00562)
Pfam (PF04560)
SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RPB2, RNA POLYMERASE II SUBUNIT 2, B150, DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE
3C
(C)
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3polymer31835330.51UniProt (P16370)
Pfam (PF01193)
Pfam (PF01000)
SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RPB3, RNA POLYMERASE II SUBUNIT 3, RNA POLYMERASE II SUBUNIT B3, B44.5, DNA-DIRECTED RNA POLYMERASE II 45 KDA POLYPEPTIDE
4D
(D)
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4polymer22125451.21UniProt (P20433)
Pfam (PF03874)
SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RPB4, RNA POLYMERASE II SUBUNIT B4, B32, DNA-DIRECTED RNA POLYMERASE II 32 KDA POLYPEPTIDE
5E
(E)
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1polymer21525117.11UniProt (P20434)
Pfam (PF03871)
Pfam (PF01191)
SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RPB5, RNA POLYMERASES I\,II\,AND III SUBUNIT ABC1, ABC27, DNA-DIRECTED RNA POLYMERASES I\,II\,AND III 27 KDA POLYPEPTIDE
6F
(F)
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2polymer15517931.81UniProt (P20435)
Pfam (PF01192)
SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RPB6, RNA POLYMERASES I\,II\,AND III SUBUNIT ABC2, ABC23, DNA-DIRECTED RNA POLYMERASES I\,II\,AND III 23 KDA POLYPEPTIDE
7G
(G)
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7polymer17119081.11UniProt (P34087)
Pfam (PF03876)
Pfam (PF00575)
SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RNA POLYMERASE II SUBUNIT B7, B16
8H
(H)
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3polymer14616525.41UniProt (P20436)
Pfam (PF03870)
SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RPB8, RNA POLYMERASES I\,II\,AND III SUBUNIT ABC3, ABC14.4, ABC14.5, DNA-DIRECTED RNA POLYMERASES I\,II\,AND III 14.5 KDA POLYPEPTIDE
9I
(I)
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9polymer12214308.21UniProt (P27999)
Pfam (PF02150)
Pfam (PF01096)
SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RBP9, RNA POLYMERASE II SUBUNIT B9, B12.6, DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9
10J
(J)
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5polymer708290.71UniProt (P22139)
Pfam (PF01194)
SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RPB10, RNA POLYMERASES I\,II\,AND III SUBUNIT ABC5, ABC10-BETA, ABC8, DNA-DIRECTED RNA POLYMERASES I\,II\,AND III 8.3 KDA POLYPEPTIDE
11K
(K)
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11polymer12013633.51UniProt (P38902)
Pfam (PF13656)
SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RPB11, RNA POLYMERASE II SUBUNIT B11, B13.6, DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE
12L
(L)
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4polymer707730.01UniProt (P40422)
Pfam (PF03604)
SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)RPB12, RNA POLYMERASES I\,II\,AND III SUBUNIT ABC4, ABC10-ALPHA
13M
(N)
5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*GP*CP*T)-3'polymer154595.01SYNTHETIC CONSTRUCTNON TEMPLATE DNA
14N
(T)
TEMPLATE DNA 27-MERpolymer278392.21SYNTHETIC CONSTRUCT
15O, P, R, S, T...
(A, B, C, I, J...)
ZINC IONnon-polymer65.48Chemie (ZN)
16Q
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains14
Total formula weight526988.3
Non-Polymers*Number of molecules9
Total formula weight547.6
All*Total formula weight527535.8
*Water molecules are not included.

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PDB entries from 2024-10-30

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