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3ZCZ

Crystal structure of a complex between Actinomadura R39 DD-peptidase and a trifluoroketone inhibitor

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
D-ALANYL-D-ALANINE CARBOXYPEPTIDASEpolymer46747704.14UniProt (P39045)
Pfam (PF02113)
ACTINOMADURA SP. R39DD-CARBOXYPEPTIDASE, DD-PEPTIDASE, PENICILLIN-BINDING PROTEIN, PBP
2E, M, R, X
(A, B, C, D)
(2R)-2-amino-7-oxo-7-{[(2R,3S)-4,4,4-trifluoro-3-hydroxybutan-2-yl]amino}heptanoic acidnon-polymer300.34Chemie (TFR)
3AA, BA, F, G, H...
(D, A, B, C)
SULFATE IONnon-polymer96.118Chemie (SO4)
4CA, DA, J, K
(D, A)
MAGNESIUM IONnon-polymer24.34Chemie (MG)
5EA, FA, GA, HA
(A, B, C, D)
waterwater18.0323Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight190816.2
Non-Polymers*Number of molecules26
Total formula weight3027.5
All*Total formula weight193843.7
*Water molecules are not included.

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PDB entries from 2025-07-16

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