3WV0
O-glycan attached to herpes simplex virus type 1 glycoprotein gB is recognized by the Ig V-set domain of human paired immunoglobulin-like type 2 receptor alpha
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Paired immunoglobulin-like type 2 receptor alpha | polymer | 120 | 13967.7 | 2 | UniProt (C9JGG1) Pfam (PF07686) UniProt (by SIFTS) (Q9UKJ1) | Homo sapiens (human) | |
| 2 | C, D (X, Y) | Envelope glycoprotein B | polymer | 7 | 609.7 | 2 | UniProt (P06437) | Human herpesvirus 1 | gB, gB-1, gB1 |
| 3 | E, F (C, D) | N-acetyl-alpha-neuraminic acid-(2-6)-2-acetamido-2-deoxy-alpha-D-galactopyranose | branched | 512.5 | 2 | In PDB GlyTouCan (G36123IU) | |||
| 4 | G, H, I, J, K... (A, B) | SULFATE ION | non-polymer | 96.1 | 8 | Chemie (SO4) | |||
| 5 | O, P, Q, R (A, B, X, Y) | water | water | 18.0 | 162 | Chemie (HOH) |
Sequence modifications
A, B: 32 - 150 (UniProt: C9JGG1)
| PDB | External Database | Details |
|---|---|---|
| Met 31 | - | expression tag |
| Gly 78 | Arg 78 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 29154.7 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1024.9 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 768.5 | |
| All* | Total formula weight | 30948.2 |
