3W5P
Crystal structure of complexes of vitamin D receptor ligand binding domain with lithocholic acid derivatives
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Vitamin D3 receptor | polymer | 271 | 30595.0 | 1 | UniProt (P13053) Pfam (PF00104) In PDB | Rattus norvegicus (rat) | VDR, 1,25-dihydroxyvitamin D3 receptor, Nuclear receptor subfamily 1 group I member 1 |
2 | C | Mediator of RNA polymerase II transcription subunit 1 | polymer | 13 | 1570.9 | 1 | UniProt (Q15648) In PDB | Homo sapiens | |
3 | A | (3beta,5beta,14beta,17alpha)-3-hydroxycholan-24-oic acid | non-polymer | 376.6 | 1 | Chemie (4OA) | |||
4 | water | water | 18.0 | 108 | Chemie (HOH) |
Sequence modifications
A: 116 - 423 (UniProt: P13053)
PDB | External Database | Details |
---|---|---|
Gly 106 | - | expression tag |
Ser 107 | - | expression tag |
His 108 | - | expression tag |
Met 109 | - | expression tag |
Gly 110 | - | expression tag |
Ser 111 | - | expression tag |
Pro 112 | - | expression tag |
Asn 113 | - | expression tag |
Ser 114 | - | expression tag |
Pro 115 | - | expression tag |
- | Ser 165 | deletion |
- | Tyr 166 | deletion |
- | Ser 167 | deletion |
- | Pro 168 | deletion |
- | Arg 169 | deletion |
- | Pro 170 | deletion |
- | Thr 171 | deletion |
- | Leu 172 | deletion |
- | Ser 173 | deletion |
- | Phe 174 | deletion |
- | Ser 175 | deletion |
- | Gly 176 | deletion |
- | Asn 177 | deletion |
- | Ser 178 | deletion |
- | Ser 179 | deletion |
- | Ser 180 | deletion |
- | Ser 181 | deletion |
- | Ser 182 | deletion |
- | Ser 183 | deletion |
- | Asp 184 | deletion |
- | Leu 185 | deletion |
- | Tyr 186 | deletion |
- | Thr 187 | deletion |
- | Thr 188 | deletion |
- | Ser 189 | deletion |
- | Leu 190 | deletion |
- | Asp 191 | deletion |
- | Met 192 | deletion |
- | Met 193 | deletion |
- | Glu 194 | deletion |
- | Pro 195 | deletion |
- | Ser 196 | deletion |
- | Gly 197 | deletion |
- | Phe 198 | deletion |
- | Ser 199 | deletion |
- | Asn 200 | deletion |
- | Leu 201 | deletion |
- | Asp 202 | deletion |
- | Leu 203 | deletion |
- | Asn 204 | deletion |
- | Gly 205 | deletion |
- | Glu 206 | deletion |
- | Asp 207 | deletion |
- | Ser 208 | deletion |
- | Asp 209 | deletion |
- | Asp 210 | deletion |
- | Pro 211 | deletion |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 32165.9 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 376.6 | |
All* | Total formula weight | 32542.5 |