3VYQ
Crystal structure of the methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence in space group P1
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D | Methyl-CpG-binding domain protein 4 | polymer | 74 | 8332.6 | 2 | UniProt (Q9Z2D7) Pfam (PF01429) In PDB | Mus musculus (mouse) | Methyl-CpG-binding protein MBD4, Mismatch-specific DNA N-glycosylase |
| 2 | B | DNA (5'-D(*AP*CP*AP*TP*CP*(5CM)P*GP*GP*TP*GP*A)-3') | polymer | 11 | 3372.2 | 1 | |||
| 3 | C | DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*AP*TP*GP*T)-3') | polymer | 11 | 3364.2 | 1 | |||
| 4 | A, D | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 5 | B | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
| 6 | water | water | 18.0 | 55 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 23401.6 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 258.3 | |
| All* | Total formula weight | 23659.9 |
