3VYK
Crystal structure of C-type lectin domain of murine dendritic cell inhibitory receptor 2 in complex with N-glycan
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | C-type lectin domain family 4, member a4 | polymer | 129 | 14960.6 | 1 | UniProt (Q5YIR8) Pfam (PF00059) | Mus musculus (mouse) | Dendritic cell immunoreceptor-2, Dendritic cell inhibitory receptor 2, MCG1050915, Protein Clec4a4 |
| 2 | B (B) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)][2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]methyl alpha-D-mannopyranoside | branched | 1128.0 | 1 | In PDB GlyTouCan (G81550YZ) | |||
| 3 | C (A) | CALCIUM ION | non-polymer | 40.1 | 1 | Chemie (CA) | |||
| 4 | D, E (A) | SULFATE ION | non-polymer | 96.1 | 2 | Chemie (SO4) | |||
| 5 | F (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
| 6 | G (A) | water | water | 18.0 | 88 | Chemie (HOH) |
Sequence modifications
A: 107 - 233 (UniProt: Q5YIR8)
| PDB | External Database | Details |
|---|---|---|
| Gly 105 | - | expression tag |
| Ser 106 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 14960.6 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 1128.0 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 294.3 | |
| All* | Total formula weight | 16383.0 |
