3VC2
Crystal structure of geranyl diphosphate C-methyltransferase from Streptomyces coelicolor A3(2) in complex with Mg2+, geranyl diphosphate, and S-adenosyl-L-homocysteine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Geranyl diphosphate 2-C-methyltransferase | polymer | 312 | 35040.1 | 12 | UniProt (Q9F1Y5) Pfam (PF08241) | Streptomyces coelicolor | GPP methyltransferase |
| 2 | CA, M, R, Y (J, A, D, H) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) PubChem (888) | |||
| 3 | BA, DA, FA, GA, N... (I, J, K, L, A...) | S-ADENOSYL-L-HOMOCYSTEINE | non-polymer | 384.4 | 12 | Chemie (SAH) PubChem (193) PubChem (13792) PubChem (189149) PubChem (439155) PubChem (5284331) PubChem (71170554) PubChem (13231890) PubChem (16760024) PubChem (25210495) PubChem (44361184) PubChem (177678424) PubChem (46936206) PubChem (21125603) PubChem (25203782) PubChem (52224400) PubChem (50989525) PubChem (51380914) PubChem (52224398) PubChem (6419189) PubChem (57544532) PubChem (59046843) PubChem (59170628) PubChem (164157219) PubChem (59576228) PubChem (66805708) PubChem (70689219) PubChem (70702054) PubChem (70832431) PubChem (118374891) PubChem (118560068) PubChem (126969526) PubChem (129105892) PubChem (143518505) PubChem (154578335) PubChem (163054214) PubChem (163335525) | |||
| 4 | AA, EA, O, T (H, J, A, D) | GERANYL DIPHOSPHATE | non-polymer | 314.2 | 4 | Chemie (GPP) PubChem (734) PubChem (445995) PubChem (5280528) | |||
| 5 | V (E) | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 6 | HA, IA, JA, KA, LA... (A, B, C, D, E...) | water | water | 18.0 | 1165 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H, I, J, K, L: 1 - 292 (UniProt: Q9F1Y5)
| PDB | External Database | Details |
|---|---|---|
| Met -19 | - | expression tag |
| Gly -18 | - | expression tag |
| Ser -17 | - | expression tag |
| Ser -16 | - | expression tag |
| His -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| Ser -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Gly -7 | - | expression tag |
| Leu -6 | - | expression tag |
| Val -5 | - | expression tag |
| Pro -4 | - | expression tag |
| Arg -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Ser -1 | - | expression tag |
| His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 420481.1 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 6063.1 | |
| All* | Total formula weight | 426544.1 |
