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3UT9

Crystal Structure of Nucleosome Core Particle Assembled with a Palindromic Widom '601' Derivative (NCP-601L)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.2polymer13515303.92UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (African clawed frog)
2B, F
(B, F)
Histone H4polymer10211263.22UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (African clawed frog)
3C, G
(C, G)
Histone H2Apolymer12913978.22UniProt (Q6AZJ8)
Pfam (PF00125)
Pfam (PF16211)
UniProt (by SIFTS) (P06897)
Xenopus laevis (African clawed frog)
4D, H
(D, H)
Histone H2B 1.1polymer12513848.12UniProt (P02281)
Pfam (PF00125)
Xenopus laevis (African clawed frog)H2B1.1
5I
(I)
145-mer DNApolymer14544761.51
6J
(J)
145-mer DNApolymer14544752.51
7K, M
(C, G)
CHLORIDE IONnon-polymer35.52Chemie (CL)
8AA, CA, DA, EA, FA...
(I, J, E)
MANGANESE (II) IONnon-polymer54.929Chemie (MN)
9BA, QA
(I, J)
POTASSIUM IONnon-polymer39.12Chemie (K)
10AB, RA, SA, TA, UA...
(J, A, B, C, D...)
waterwater18.0140Chemie (HOH)
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103SEE REMARK 999
D, H: -2 - 122 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 29Ser 33SEE REMARK 999
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight198301.0
Non-Polymers*Number of molecules33
Total formula weight1742.3
All*Total formula weight200043.3
*Water molecules are not included.

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PDB entries from 2025-07-30

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