3UBX
Crystal structure of the mouse CD1d-C20:2-aGalCer-L363 mAb Fab complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, D | Antigen-presenting glycoprotein CD1d1 | polymer | 286 | 32770.8 | 2 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) In PDB | Mus musculus (mouse) | T cell surface glycoprotein CD1d |
2 | B, E | Beta-2-microglobulin | polymer | 99 | 11660.4 | 2 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (mouse) | |
3 | L, I | L363 light chain (IGKV13-84*01) | polymer | 214 | 23594.0 | 2 | Mus musculus (mouse) | ||
4 | H, G | L363 heavy chain (IGHV9-4*02) | polymer | 222 | 23884.9 | 2 | Mus musculus (mouse) | ||
5 | C, F | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
6 | A, D | (11Z,14Z)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]icosa-11,14-dienamide | non-polymer | 770.1 | 2 | Chemie (09N) | |||
7 | A, D | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) |
Sequence modifications
A, D: 1 - 279 (UniProt: P11609)
B, E: 1 - 99 (UniProt: P01887)
PDB | External Database | Details |
---|---|---|
His 201 | Asp 219 | SEE REMARK 999 |
His 280 | - | expression tag |
His 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
His 285 | - | expression tag |
His 286 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ala 85 | Asp 105 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 183820.0 | |
Branched | Number of molecules | 2 |
Total formula weight | 848.8 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 1982.7 | |
All* | Total formula weight | 186651.5 |