3TY9
Crystal Structure of C. Thermocellum PNKP Ligase Domain AMP-Adenylate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Polynucleotide 2',3'-cyclic phosphate phosphodiesterase / polynucleotide 5'-hydroxyl-kinase / polynucleotide 3'-phosphatase | polymer | 393 | 45100.7 | 4 | UniProt (A3DJ38) Pfam (PF16542) | Clostridium thermocellum | |
| 2 | E, M, S, X (A, B, C, D) | ADENOSINE MONOPHOSPHATE | non-polymer | 347.2 | 4 | Chemie (AMP) | |||
| 3 | AA, F, G, H, N... (D, A, B, C) | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 10 | Chemie (MPD) | |||
| 4 | BA, I, J, O, P... (D, A, B) | (4R)-2-METHYLPENTANE-2,4-DIOL | non-polymer | 118.2 | 6 | Chemie (MRD) | |||
| 5 | K (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 6 | CA, L, R, W (D, A, B, C) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 7 | DA, EA, FA, GA (A, B, C, D) | water | water | 18.0 | 52 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 479 - 870 (UniProt: A3DJ38)
| PDB | External Database | Details |
|---|---|---|
| Ser 478 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 180402.7 | |
| Non-Polymers* | Number of molecules | 25 |
| Total formula weight | 3469.0 | |
| All* | Total formula weight | 183871.7 |
