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3TFS

Ternary complex structure of DNA polymerase beta with a gapped DNA substrate and a, b dAMP(CFH)PP in the active site: Stereoselective binding of (S) isomer

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA polymerase betapolymer33538241.71UniProt (P06746)
Pfam (PF14716)
Pfam (PF10391)
Pfam (PF14792)
Pfam (PF14791)
Homo sapiens (human)
2B
(T)
DNA (5'-D(*CP*CP*GP*AP*CP*TP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3')polymer164844.11
3C
(P)
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3')polymer103061.01
4D
(D)
DNA (5'-D(P*GP*TP*CP*GP*G)-3')polymer51536.01
5E
(A)
2'-deoxy-5'-O-[(S)-{(S)-fluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]adenosinenon-polymer507.21Chemie (FHA)
6F, G
(A)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
7H, I
(A)
SODIUM IONnon-polymer23.02Chemie (NA)
8J, K, L, M
(A)
CHLORIDE IONnon-polymer35.54Chemie (CL)
9N, O, P, Q
(A, T, P, D)
waterwater18.0356Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight47682.9
Non-Polymers*Number of molecules9
Total formula weight743.6
All*Total formula weight48426.5
*Water molecules are not included.

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PDB entries from 2025-06-11

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