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3TAR

Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-6) Position

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA polymerase Ipolymer59267518.31UniProt (C9RTX7)Geobacillus
2B
(B)
5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*CP*AP*CP*GP*TP*C)-3'polymer154555.01
3C
(C)
5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'polymer164923.21
4D, E
(D, E)
beta-D-fructofuranose-(2-1)-alpha-D-glucopyranosebranched342.32In PDB
BIRD (PRD_900003)
sucrose
5F, G, H
(A)
SULFATE IONnon-polymer96.13Chemie (SO4)
6I
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
7J, K, L
(A, B, C)
waterwater18.0670Chemie (HOH)
Sequence modifications
A: 285 - 876 (UniProt: C9RTX7)
PDBExternal DatabaseDetails
Glu 456Ala 456SEE REMARK 999
Lys 505Glu 505SEE REMARK 999
His 823Arg 823SEE REMARK 999
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight76996.5
BranchedNumber of molecules2
Total formula weight684.6
Non-Polymers*Number of molecules4
Total formula weight312.5
All*Total formula weight77993.6
*Water molecules are not included.

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PDB entries from 2025-07-30

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