3T80
Crystal structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Salmonella typhimurium bound to cytidine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | polymer | 162 | 17194.8 | 6 | UniProt (Q8ZMF7) Pfam (PF02542) | Salmonella enterica subsp. enterica serovar Typhimurium | MECDP-synthase, MECPS |
| 2 | AA, G, GA, LA, O... (D, A, E, F, B...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
| 3 | BA, CA, H, HA, I... (D, A, E, F, B...) | MAGNESIUM ION | non-polymer | 24.3 | 8 | Chemie (MG) PubChem (888) | |||
| 4 | DA, IA, J, NA, Q... (D, E, A, F, B...) | 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE | non-polymer | 243.2 | 6 | Chemie (CTN) PubChem (16760387) PubChem (24729357) PubChem (25085165) PubChem (54353063) PubChem (44264135) PubChem (58899188) PubChem (44307610) PubChem (44356841) PubChem (45109772) PubChem (596) PubChem (70994952) PubChem (6480064) PubChem (57764456) PubChem (57807005) PubChem (58460874) PubChem (58519508) PubChem (71230474) PubChem (59476533) PubChem (59713247) PubChem (60138999) PubChem (66800112) PubChem (68199635) PubChem (89495334) PubChem (90089493) PubChem (117732781) PubChem (122468509) PubChem (6175) PubChem (6253) PubChem (114682) PubChem (122948) PubChem (160696) PubChem (3013211) PubChem (453552) PubChem (638040) PubChem (1265901) PubChem (5702244) PubChem (6476646) PubChem (6479885) PubChem (6551012) PubChem (6603781) PubChem (6713582) PubChem (12358851) PubChem (142117909) PubChem (148710634) PubChem (168266058) PubChem (171699434) | |||
| 5 | JA, K (E, A) | PYROPHOSPHATE 2- | non-polymer | 176.0 | 2 | Chemie (POP) PubChem (4995) | |||
| 6 | EA, FA, KA, L, M... (D, E, A, F, B...) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 14 | Chemie (EDO) | |||
| 7 | QA, RA, SA, TA, UA... (A, B, C, D, E...) | water | water | 18.0 | 116 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 1 - 159 (UniProt: Q8ZMF7)
| PDB | External Database | Details |
|---|---|---|
| Ser -2 | - | expression tag |
| Asn -1 | - | expression tag |
| Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 103169.0 | |
| Non-Polymers* | Number of molecules | 36 |
| Total formula weight | 3267.1 | |
| All* | Total formula weight | 106436.0 |
