3T6Q
Crystal structure of mouse RP105/MD-1 complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, B) | CD180 antigen | polymer | 606 | 67986.0 | 2 | UniProt (Q62192) Pfam (PF18831) Pfam (PF13855) | Mus musculus (mouse) | Lymphocyte antigen 78, Ly-78, Radioprotective 105 kDa protein |
| 2 | B, D (C, D) | Lymphocyte antigen 86 | polymer | 145 | 16202.1 | 2 | UniProt (O88188) Pfam (PF02221) | Mus musculus (mouse) | Ly-86, Protein MD-1 |
| 3 | E (E) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1559.4 | 1 | In PDB GlyTouCan (G37135JQ) | |||
| 4 | F, G, I (F, G, I) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 5 | H (H) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1397.2 | 1 | In PDB GlyTouCan (G61846BY) | |||
| 6 | J (A) | COPPER (II) ION | non-polymer | 63.5 | 1 | Chemie (CU) | |||
| 7 | AA, BA, EA, HA, IA... (B, D, A, C) | GLYCEROL | non-polymer | 92.1 | 15 | Chemie (GOL) | |||
| 8 | CA, DA, FA, GA, KA... (B, D, A, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 13 | Chemie (NAG) | |||
| 9 | MA, NA, OA, PA (A, C, B, D) | water | water | 18.0 | 1149 | Chemie (HOH) |
Sequence modifications
C, D: 20 - 162 (UniProt: O88188)
| PDB | External Database | Details |
|---|---|---|
| Glu 163 | - | expression tag |
| Phe 164 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 168376.3 | |
| Branched | Number of molecules | 5 |
| Total formula weight | 4229.8 | |
| Non-Polymers* | Number of molecules | 29 |
| Total formula weight | 4320.7 | |
| All* | Total formula weight | 176926.8 |
