3SIT
Crystal structure of porcine CRW-8 Rotavirus VP8* in complex with aceramido-GM3
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | Outer capsid protein VP4 | polymer | 163 | 18459.5 | 2 | UniProt (P0C6Y8) Pfam (PF00426) In PDB | Porcine rotavirus (RV-A) | VP8* carbohydrate recognition protein |
| 2 | C, D | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | branched | 633.6 | 2 | In PDB BIRD (PRD_900025) GlyTouCan (G92323ZH) | 3'-sialyl-alpha-lactose | ||
| 3 | A, B | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
| 4 | A, B | (4R)-2-METHYLPENTANE-2,4-DIOL | non-polymer | 118.2 | 2 | Chemie (MRD) | |||
| 5 | water | water | 18.0 | 327 | Chemie (HOH) |
Sequence modifications
A, B: 64 - 224 (UniProt: P0C6Y8)
| PDB | External Database | Details |
|---|---|---|
| Gly 62 | - | expression tag |
| Ser 63 | - | expression tag |
| Gln 70 | Arg 70 | engineered mutation |
| Ile 82 | Val 82 | engineered mutation |
| Asn 151 | Ser 151 | engineered mutation |
| Ser 201 | Leu 201 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 36919.0 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1267.1 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 282.3 | |
| All* | Total formula weight | 38468.5 |
